mrc-ide / reestimate_covidIFR_analysisLinks
Repo for work on ICL Report 34 and subsequent Comm Med Methods Paper
☆9Updated 3 years ago
Alternatives and similar repositories for reestimate_covidIFR_analysis
Users that are interested in reestimate_covidIFR_analysis are comparing it to the libraries listed below
Sorting:
- Age-specific mortality and immunity patterns of SARS-CoV-2 https://www.nature.com/articles/s41586-020-2918-0☆24Updated 4 years ago
- Curated datasets on reported cases of the SARS-CoV-2 Omicron (B.1.1.529) Variant of Concern☆10Updated 3 years ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 3 years ago
- Utility functions for the COVID-19 forecast hub☆18Updated last year
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆15Updated 5 years ago
- The data API server for outbreak.info☆11Updated 5 months ago
- Workshop on hhh4 and the endemic-epidemic framework☆17Updated 2 years ago
- An R package to manipulate MCMC samples☆17Updated 3 weeks ago
- Infectious disease model library and utilities☆14Updated 2 years ago
- European Covid-19 Forecast Hub.☆48Updated 7 months ago
- In this work, we use S-gene target failure (SGTF) as a proxy of variant status combined with reported case counts to explore the evidence…☆15Updated 2 years ago
- ☆15Updated 3 years ago
- Points of Significance: Modeling infectious epidemics☆11Updated 7 months ago
- R package to work with IAMC-format data☆13Updated last year
- ☆7Updated 7 years ago
- RStudio on Binder / JupyterHub☆69Updated last week
- Tools for teaching and doing data science without an internet connection☆11Updated 7 months ago
- collecting and organizing epidemiological covid-19 data☆11Updated 4 years ago
- A Bayesian model for time-series count data with weekend effects and a lagged reporting process☆10Updated 3 years ago
- Code to test Rt estimates against synthetic data☆18Updated 4 years ago
- ☆26Updated last year
- MetaWards disease metapopulation analysis and modelling software. Professional geographical SIR model with a flexible plugin architecture…☆13Updated 11 months ago
- An R package for Bayes Linear emulation and history matching.☆16Updated 3 months ago
- R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic☆11Updated 9 months ago
- Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.☆18Updated this week
- ☆27Updated 4 years ago
- EcoEpi shinyApps☆18Updated 5 years ago
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago