mrc-ide / reestimate_covidIFR_analysisLinks
Repo for work on ICL Report 34 and subsequent Comm Med Methods Paper
☆9Updated 3 years ago
Alternatives and similar repositories for reestimate_covidIFR_analysis
Users that are interested in reestimate_covidIFR_analysis are comparing it to the libraries listed below
Sorting:
- Age-specific mortality and immunity patterns of SARS-CoV-2 https://www.nature.com/articles/s41586-020-2918-0☆24Updated 4 years ago
- Curated datasets on reported cases of the SARS-CoV-2 Omicron (B.1.1.529) Variant of Concern☆10Updated 3 years ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 2 years ago
- ☆17Updated 4 years ago
- An R package for Bayes Linear emulation and history matching.☆16Updated 3 months ago
- collecting and organizing epidemiological covid-19 data☆11Updated 4 years ago
- ☆26Updated 4 years ago
- Infectious disease model library and utilities☆14Updated 2 years ago
- R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic☆11Updated 8 months ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- Excess deaths due to COVID-19 pandemic in 2020☆11Updated 3 years ago
- Workshop on hhh4 and the endemic-epidemic framework☆17Updated 2 years ago
- Bayesian Modelling in Epidemiology Case Line Lists☆13Updated last year
- Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.☆18Updated last month
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆15Updated 5 years ago
- A Bayesian model for time-series count data with weekend effects and a lagged reporting process☆10Updated 3 years ago
- Code to test Rt estimates against synthetic data☆17Updated 4 years ago
- Monte-Carlo State Space Models☆19Updated 11 months ago
- Utility functions for the COVID-19 forecast hub☆18Updated last year
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago
- R package for Bayesian nonparametric adaptive smoothing with Stan☆9Updated 4 years ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Updated 2 weeks ago
- Two-stage interrupted time series analysis of excess mortality in Italy during the COVID-19 pandemic☆16Updated 3 months ago
- Data and statistical models for biomarker shedding.☆13Updated this week
- A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.☆19Updated 7 months ago
- Model-based Inference in Ecology and Epidemiology☆5Updated 4 years ago
- Code to replicate 'Quantifying impacts of the COVID-19 pandemic through life expectancy losses: a population-level study of 29 countries'☆16Updated 3 years ago
- Inference framework for serological data☆18Updated 2 weeks ago