reichlab / covidHubUtilsLinks
Utility functions for the COVID-19 forecast hub
☆18Updated last year
Alternatives and similar repositories for covidHubUtils
Users that are interested in covidHubUtils are comparing it to the libraries listed below
Sorting:
- An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…☆37Updated 2 years ago
- ☆40Updated last year
- CRAN Task View: Epidemiology☆24Updated last week
- Infectious disease model library and utilities☆14Updated 3 years ago
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆62Updated this week
- Workshop on hhh4 and the endemic-epidemic framework☆18Updated 2 years ago
- ☆17Updated 4 years ago
- ☆29Updated 3 months ago
- R package for deriving social mixing matrices from survey data.☆41Updated 3 weeks ago
- Excess deaths due to COVID-19 pandemic in 2020☆11Updated 3 years ago
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Updated last month
- Code to test Rt estimates against synthetic data☆18Updated 4 years ago
- Code to replicate 'Quantifying impacts of the COVID-19 pandemic through life expectancy losses: a population-level study of 29 countries'☆17Updated 3 years ago
- epidemia package☆48Updated 3 years ago
- ☆42Updated last month
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH☆19Updated 3 years ago
- R Package for individual based epidemiological models☆30Updated 2 months ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated 2 years ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- A tool to estimate time varying instantaneous reproduction number during epidemics☆99Updated 4 months ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆131Updated last week
- R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic☆11Updated last year
- Two-stage interrupted time series analysis of excess mortality in Italy during the COVID-19 pandemic☆16Updated 7 months ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- Estimating excess mortality due to P&I in the US related to COVID-19☆25Updated 4 years ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 3 years ago
- EcoEpi shinyApps☆18Updated 6 years ago
- Interactive plotting for mathematical models of infectious disease spread☆14Updated last year
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆16Updated 6 years ago