Alternatives and similar repositories for covidHubUtils:

Users that are interested in covidHubUtils are comparing it to the libraries listed below

• cdcepi / Flusight-forecast-data
  ☆40Updated 9 months ago
• epiforecasts / covidregionaldata
  An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…
  ☆37Updated 2 years ago
• seabbs / idmodelr
  Infectious disease model library and utilities
  ☆14Updated 2 years ago
• SineadMorris / shinySIR
  Interactive plotting for mathematical models of infectious disease spread
  ☆14Updated 10 months ago
• cran-task-views / Epidemiology
  CRAN Task View: Epidemiology
  ☆22Updated 3 weeks ago
• gasparrini / ItalyCOVIDdeath
  Two-stage interrupted time series analysis of excess mortality in Italy during the COVID-19 pandemic
  ☆16Updated 2 months ago
• epiforecasts / EpiNow
  Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
  ☆33Updated 2 years ago
• goldingn / neuts2efficacy
  modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission
  ☆17Updated last year
• mhoehle / STA427_SM4IDE
  Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH
  ☆18Updated 3 years ago
• nfidd / nfidd
  Course on nowcasting and forecasting of infectious disease dynamcis
  ☆16Updated 3 weeks ago
• calumdavey / RUG
  Repo for the LSHTM R Users Group (RUG)
  ☆9Updated 3 years ago
• epiforecasts / inc2prev
  Estimate epidemiological quantities from repeated cross-sectional prevalence measurements
  ☆17Updated last year
• mac-theobio / McMasterPandemic
  SEIR+ model
  ☆19Updated 7 months ago
• cdcepi / FluSight-forecasts
  FluSight Forecast Submissions
  ☆19Updated last year
• gkonstantinoudis / ExcessDeathsCOVID
  Excess deaths due to COVID-19 pandemic in 2020
  ☆10Updated 3 years ago
• mrc-ide / individual
  R Package for individual based epidemiological models
  ☆30Updated 7 months ago
• mrc-ide / epireview
  ☆29Updated 3 weeks ago
• adrian-lison / EpiSewer
  An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.
  ☆21Updated this week
• FluSightNetwork / cdc-flusight-ensemble
  Guidelines and forecasts for a collaborative U.S. influenza forecasting project.
  ☆38Updated 4 years ago
• epinowcast / epinowcast
  Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…
  ☆61Updated 3 weeks ago
• covidestim / covidestim
  Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States
  ☆27Updated last week
• epiforecasts / socialmixr
  R package for deriving social mixing matrices from survey data.
  ☆38Updated last month
• cobeylab / Rt_estimation
  Code to test Rt estimates against synthetic data
  ☆17Updated 4 years ago
• adamkucharski / scrapR
  Extract raw underlying data from PDF figures
  ☆55Updated last year
• jstockwin / EpiEstimApp
  Source code for the EpiEstim app.
  ☆31Updated 4 years ago
• WHO-Collaboratory / collaboratory-epiparameter-community
  ☆41Updated last month
• R4EPI / sitrep
  Report templates and helper functions for applied epidemiology
  ☆41Updated last month
• MJomaba / flu-evidence-synthesis
  Code for reconstructing influenza dynamics from surveillance data using evidence synthesis techniques
  ☆21Updated 2 years ago
• kpzoo / EpiFilter
  Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…
  ☆22Updated last year
• reconverse / incidence2
  Compute and visualise incidence (reworking of the original incidence package)
  ☆17Updated last week