reichlab / covidHubUtilsLinks
Utility functions for the COVID-19 forecast hub
☆18Updated last year
Alternatives and similar repositories for covidHubUtils
Users that are interested in covidHubUtils are comparing it to the libraries listed below
Sorting:
- Infectious disease model library and utilities☆14Updated 2 years ago
- CRAN Task View: Epidemiology☆23Updated 3 weeks ago
- Create Contact Matrices from Population Data☆20Updated 2 months ago
- R Package for individual based epidemiological models☆30Updated 10 months ago
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Updated last month
- Course on nowcasting and forecasting of infectious disease dynamics☆19Updated 2 weeks ago
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆61Updated last week
- ☆29Updated last month
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- Guide for development and peer-review of statistical software☆45Updated last week
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH☆19Updated 3 years ago
- An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…☆37Updated 2 years ago
- Workshop on hhh4 and the endemic-epidemic framework☆17Updated 2 years ago
- R package for estimating excess deaths from daily count data☆20Updated 3 months ago
- R package with social contact data for 177 regions (Prem et al. 2017; Prem et al. 2021)☆9Updated last week
- Utilities for Scoring and Assessing Predictions☆53Updated 2 weeks ago
- ☆30Updated this week
- Two-stage interrupted time series analysis of excess mortality in Italy during the COVID-19 pandemic☆16Updated 5 months ago
- Materials for the "Advanced Shiny" course for Astra Zeneca☆32Updated 3 years ago
- Compute and visualise incidence (reworking of the original incidence package)☆17Updated last month
- A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.☆19Updated 8 months ago
- ☆41Updated last month
- An R package for the analysis of infectious disease transmission data☆10Updated 3 years ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- RECON learn: a free, open platform for training material on epidemics analysis☆37Updated 2 years ago
- Bayesian Inference of Complex Panel Data☆34Updated 3 weeks ago
- R package to implement and visualize several epidemiological forecasting methods.☆20Updated 11 months ago
- R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic☆11Updated 10 months ago
- R package for deriving social mixing matrices from survey data.☆38Updated 3 weeks ago