Fast C functions for the computing the positional popcount (pospopcnt).
☆55Jan 23, 2020Updated 6 years ago
Alternatives and similar repositories for positional-popcount
Users that are interested in positional-popcount are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast C header-only library for popcnt, pospopcnt, and set algebraic operations☆45Dec 16, 2019Updated 6 years ago
- benchmarking positional population count☆17Oct 19, 2025Updated 9 months ago
- Fast algorithms for computing XX^T for binary matrices☆14Sep 24, 2019Updated 6 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- SIMDized check which bytes are in a set☆31Oct 21, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- testbed for different SIMD implementations for set intersection and set union☆41Jan 29, 2020Updated 6 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 7 years ago
- ☆11Aug 2, 2025Updated 11 months ago
- Fast random number generators: Vectorized (SIMD) version of xorshift128+☆123Jul 22, 2020Updated 6 years ago
- C library to compute the Hamming weight of arrays☆51Dec 9, 2018Updated 7 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- 🚀 Fast C/C++ bit population count library☆369Updated this week
- my PhD thesis☆36Jul 10, 2019Updated 7 years ago
- Linear vs binary search benchmark☆42Dec 12, 2019Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- AVX512F and AVX2 versions of quick sort☆104Nov 22, 2017Updated 8 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- A fast SIMD parser for CSV files☆163Jul 2, 2022Updated 4 years ago
- My very own vxsort re-implemented with "modern" C++ by a complete idiot (in C++)☆33Jun 12, 2026Updated last month
- ☆24Apr 2, 2021Updated 5 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆27Apr 29, 2024Updated 2 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 6 years ago
- Shuffle-based predicate matcher and all-round branch free swiss army chainsaw☆17Jun 5, 2018Updated 8 years ago
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆14Oct 14, 2020Updated 5 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Nov 27, 2025Updated 7 months ago
- AVX512 population count routines☆23Aug 2, 2019Updated 6 years ago
- ☆28Apr 9, 2025Updated last year
- Pruning elements in SIMD vectors (i.e., packing left elements)☆68Jan 30, 2024Updated 2 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- ☆17Jan 5, 2021Updated 5 years ago
- elPrep reimplementations in C++ and Java, only for benchmark comparisons☆10Feb 13, 2023Updated 3 years ago
- Parallel Sequence to Graph Alignment☆35Nov 26, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆26Jul 1, 2026Updated 3 weeks ago
- This repo is deprecated. Please use gfatools instead.☆15Aug 17, 2018Updated 7 years ago
- Small utility to quickly find size and GC content of a fasta file. Can also extract sequence. Who doesn't like QUICK and DIRTY!☆13Aug 27, 2018Updated 7 years ago
- ☆16Jan 10, 2022Updated 4 years ago
- ☆24May 22, 2025Updated last year
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year
- Support for С++20 std::stop_token to interrupt the blocking Linux syscalls without throwing any exception.☆20Jul 6, 2020Updated 6 years ago