Understand the Gillespie algorithm and build it yourself in Python
☆24Feb 23, 2018Updated 8 years ago
Alternatives and similar repositories for gillespie-algorithm-python
Users that are interested in gillespie-algorithm-python are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Gillespie Stochastic Simulation Algorithm☆14Jun 29, 2013Updated 13 years ago
- Stochastic Gillespie-type simulations using Julia☆67Feb 24, 2026Updated 5 months ago
- Quasiclassical and classical dynamics with Gaussian☆13Apr 26, 2021Updated 5 years ago
- StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks☆44Jun 20, 2025Updated last year
- ☆12Apr 26, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆13Sep 24, 2025Updated 10 months ago
- Python image tiling library for image processing, object detection, etc.☆12Jul 25, 2024Updated 2 years ago
- ☆10Sep 29, 2022Updated 3 years ago
- Calculate allowed interactions in QED☆10Nov 2, 2022Updated 3 years ago
- Pathogen evolution, selection and immunity☆46Mar 5, 2024Updated 2 years ago
- Designer scaffolded DNA DX-based wireframe lattices☆14Jul 28, 2018Updated 8 years ago
- This is a C version of the SCF code found in Appendix B of Modern Quantum Chemistry, An Introduction to Electronic Structure Theory by A.…☆10Jan 1, 2019Updated 7 years ago
- A minimal Python-based assembler for multiple architectures.☆15Apr 25, 2025Updated last year
- interactive phylogenetic tree viewer☆11Jun 26, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- DNA-based End-to-End Encrypted EFS Database created using Python 🧬☆10Dec 21, 2023Updated 2 years ago
- Tutorial at EuroSciPy 2019/2022☆11Aug 15, 2023Updated 2 years ago
- Document binarization using deep learning☆10Dec 31, 2020Updated 5 years ago
- issues for semina "Data Visulization"☆13Dec 23, 2025Updated 7 months ago
- Basic implementation 4th order Runge Kutta method for ODE's☆11Jun 9, 2026Updated last month
- An implementation of a neural network training routine using derivative information in Pytorch.☆11Dec 19, 2020Updated 5 years ago
- ☆12May 31, 2021Updated 5 years ago
- LDPC codes for Illumina sequencing-based DNA storage☆11Dec 2, 2020Updated 5 years ago
- SNUPI (Structured NUcleic-acids Programming Interface)☆15Feb 19, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A simple script to plot the Roofline model for given HW platforms and applications☆10Mar 17, 2026Updated 4 months ago
- ☆15Apr 13, 2025Updated last year
- A GUI for automated sequence design of wireframe scaffolded DNA origami☆14Nov 3, 2021Updated 4 years ago
- End-to-end ML workflow based on the talk I gave in CHE596.☆12Jul 26, 2024Updated 2 years ago
- The matching routine for interologs identification based on co-evolution☆11Jul 17, 2018Updated 8 years ago
- 2D Ising model in C++, including IPython notebook examples☆12Nov 14, 2019Updated 6 years ago
- Improved contact predictions using the recognition of protein like contact patterns.☆14May 18, 2018Updated 8 years ago
- Recreation of the DNA Sequence Classification Paper☆12Oct 27, 2016Updated 9 years ago
- Python implementation of Varshamov-Tenengolts codes for correction of single insertion/deletion errors☆13Aug 13, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tight-binding calculations in Mathematica☆16Dec 18, 2025Updated 7 months ago
- 🧬 Analyzing compression algorithms for genomic sequencing data☆12Feb 14, 2020Updated 6 years ago
- User interface to perform quantum transport calculations with non equilibrium Green's functions☆14Aug 14, 2018Updated 7 years ago
- Networkx implementation of the SIS epidemic model for large and heterogeneous networks☆18Aug 12, 2023Updated 2 years ago
- NumPy aware dynamic Python compiler using LLVM☆12Nov 7, 2024Updated last year
- Maximum-likelihood parameter estimation for terahertz time-domain spectroscopy☆12May 30, 2021Updated 5 years ago
- Computational analysis of nucleic acids structures using graph neural networks☆15Mar 25, 2024Updated 2 years ago