Alternatives and similar repositories for snakemake-training

Users that are interested in snakemake-training are comparing it to the libraries listed below

• carpentries-incubator / snakemake-novice-bioinformatics
  Introduction to Snakemake for Bioinformatics
  ☆20Updated this week
• hpc-carpentry / hpc-python
  HPC Python lesson materials
  ☆61Updated 2 years ago
• lanl / PyBNF
  An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…
  ☆24Updated last week
• vsbuffalo / snakemake-tutorial
  Snakemake tutorial materials
  ☆19Updated 5 years ago
• deto / Snakemake_Tutorial
  A short tutorial on getting started with Snakemake for workflow management
  ☆53Updated 6 years ago
• Snakemake-Profiles / slurm
  Cookiecutter for snakemake slurm profile
  ☆132Updated last year
• asntech / postdoc-funding-schemes
  Funding schemes and travel grant opportunities for postdocs
  ☆54Updated 6 years ago
• snakemake-workflows / snakemake-workflow-template
  A template for standard compliant snakemake-workflows
  ☆111Updated last month
• kapsakcj / win10-linux-conda-how-to
  A tutorial on how to set up a Linux environment on a computer running Windows 10. Followed by how to install and use (bio)conda.
  ☆43Updated last year
• dpryan79 / Misc
  Misc. utilities
  ☆11Updated 6 years ago
• conda-incubator / conda-env-builder
  Build and maintain multiple custom conda environments all in one place.
  ☆39Updated 8 months ago
• snakemake / snakemake-executor-plugin-slurm
  A Snakemake executor plugin for submitting jobs to a SLURM cluster
  ☆39Updated last week
• epruesse / ymp
  Flexible omics pipeline
  ☆18Updated 3 months ago
• singularityhub / singularity-deploy
  Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client
  ☆17Updated last year
• brentp / slurmpy
  submit jobs to slurm with quick-and-dirty python
  ☆94Updated 2 years ago
• Snakemake-Profiles / pbs-torque
  ☆17Updated last year
• mglerner / IntroToBiophysics
  Introduction to Biophysics, requires one semester of calculus-based Physics.
  ☆28Updated last year
• troycomi / reportseff
  Tabular seff
  ☆83Updated this week
• jdblischak / smk-simple-slurm
  A simple Snakemake profile for Slurm without --cluster-config
  ☆161Updated last year
• zhanglab / psamm
  Curation and analysis of metabolic models
  ☆35Updated 2 years ago
• gmiaslab / mathiomica
  MathIOmica is a Mathematica package for omics data analyses
  ☆12Updated 2 years ago
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated 2 years ago
• snakemake / snakemake-workflow-catalog
  A statically generated catalog of available Snakemake workflows
  ☆34Updated this week
• nvictus / Gillespie
  Gillespie Stochastic Simulation Algorithm
  ☆14Updated 12 years ago
• snakemake / snakefmt
  The uncompromising Snakemake code formatter
  ☆176Updated this week
• eWaterCycle / setup-apptainer
  GitHub action to setup apptainer
  ☆15Updated 7 months ago
• jdherman / hpc-submission-scripts
  Example job submission scripts for HPC systems (PBS and SLURM)
  ☆45Updated 8 years ago
• snakemake / snakeface
  The snakemake interface, currently works like a notebook (under development)
  ☆19Updated 3 years ago
• price0416 / DEvis
  DEvis: an R package for aggregation and visualization of differential expression data
  ☆20Updated 4 years ago
• NIH-HPC / singularity-def-files
  definition files and wrapper scripts used by NIH HPC staff to install user-facing apps on the Biowulf cluster
  ☆30Updated 4 years ago