Alternatives and similar repositories for imagej_plugins

Users that are interested in imagej_plugins are comparing it to the libraries listed below

• FlowRegSuite / flow_registration
  Flow-Registration toolbox for 2P motion compensation
  ☆27Updated 3 months ago
• ved-sharma / HyperStackReg
  An ImageJ/FIJI plugin for multi-channel Hyperstack alignment (registration)
  ☆13Updated 3 years ago
• saalfeldlab / bigwarp
  A tool for manual pointwise deformable registration using bigdataviewer.
  ☆34Updated last month
• jefferis / fiji-cmtk-gui
  Simple GUI frontend for CMTK image registration tools in Fiji/ImageJ
  ☆13Updated 8 years ago
• miura / MultiStackRegistration
  Modified version of MultiStackRegistration, for use from scripts.
  ☆13Updated 3 years ago
• bleach1by1 / BIRDS_plugin
  BIRDS plug-in on Fiji and attached jar package
  ☆21Updated 4 years ago
• yu-lab-vt / SynQuant
  A Fiji plugin that automatically quantify synapses from multi-channel fluorescence microscopy images.
  ☆18Updated last year
• CellMigrationLab / Fast4DReg
  Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…
  ☆40Updated 8 months ago
• haiderriazkhan / CANDLE-J
  Collaborative Approach for eNhanced Denoising under Low-light Excitation
  ☆20Updated 7 months ago
• ij-plugins / ijp-color
  Plugins for ImageJ - color space conversions and color calibration
  ☆25Updated last year
• mastodon-sc / mastodon
  Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.
  ☆80Updated 3 weeks ago
• embl-cba / elastix-wrapper
  ☆14Updated 11 months ago
• haesleinhuepf / napari-brightness-contrast
  ☆13Updated 8 months ago
• pmascalchi / ImageJ_Auto-white-balance-correction
  ImageJ / Fiji macro to automatically correct white balance in RGB images
  ☆16Updated 8 years ago
• fiji / SPIM_Registration
  Deprecated, instead check out: https://github.com/preibischLab/multiview-reconstruction & https://github.com/PreibischLab/BigStitcher
  ☆23Updated last year
• saramcardle / FS2K
  Files associated with the From Samples To Knowledge 2025 QuPath training course
  ☆13Updated 8 months ago
• pswapnesh / misic
  segmentation of rod-shaped bacteria
  ☆15Updated 2 years ago
• aafkegros / MicroscopyNodes
  Loading and handling microscopy data in blender
  ☆147Updated 2 months ago
• georgeoshardo / SyMBac
  Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.
  ☆22Updated 5 months ago
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆38Updated 4 years ago
• cleterrier / ChrisLUTs
  A collection of LUTs for ImageJ/Fiji
  ☆73Updated 5 years ago
• BiAPoL / PoL-BioImage-Analysis-TS-GPU-Accelerated-Image-Analysis
  PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track
  ☆28Updated last year
• bene51 / 3Dscript
  Create 3D/4D animations using a natural language-based syntax
  ☆61Updated 7 months ago
• nvladimus / npy2bdv
  Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
  ☆34Updated last year
• DanuserLab / u-shape3D
  Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…
  ☆31Updated 8 months ago
• idse / imsane
  ☆12Updated 4 years ago
• marrlab / BaSiC
  A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images
  ☆64Updated 9 months ago
• EricThomson / CCN_caiman_mesmerize_workshop_2023
  Repo for CCN workshop on caiman and mesmerize in January 2023
  ☆13Updated 2 years ago
• zitmen / thunderstorm
  ThunderSTORM: a comprehensive ImageJ plugin for SMLM data analysis and super-resolution imaging
  ☆108Updated 7 years ago
• grishkam / QuickFigures
  QuickFigures is a toolset for creating scientific figures see publication for details
  ☆36Updated this week