qztseng / imagej_plugins
ImageJ plugins
☆13Updated last year
Alternatives and similar repositories for imagej_plugins:
Users that are interested in imagej_plugins are comparing it to the libraries listed below
- An ImageJ/FIJI plugin for multi-channel Hyperstack alignment (registration)☆12Updated 2 years ago
- Modified version of MultiStackRegistration, for use from scripts.☆11Updated 2 years ago
- Simple GUI frontend for CMTK image registration tools in Fiji/ImageJ☆12Updated 7 years ago
- BIRDS plug-in on Fiji and attached jar package☆18Updated 3 years ago
- A tool for manual pointwise deformable registration using bigdataviewer.☆27Updated last week
- Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas☆59Updated this week
- Example vignette for dotdotdot software☆18Updated 3 years ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆17Updated last month
- Plugins for ImageJ - color space conversions and color calibration☆23Updated last year
- EASI-FISH analysis pipeline for spatial transcriptomics☆33Updated 3 months ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆48Updated 2 weeks ago
- Community-contributed and experimental CellProfiler modules.☆63Updated 3 weeks ago
- A multi-dimensional spatial image data structure for scientific Python.☆37Updated 7 months ago
- Core functionality of NanoJ☆15Updated 10 months ago
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆88Updated 3 years ago
- Spatial analysis of FISH data☆29Updated 8 months ago
- List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images☆24Updated 2 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 2 months ago
- Create movies from series of key-frames in napari.☆38Updated 3 years ago
- ☆13Updated 2 weeks ago
- Python API and Jupyter widget for Vitessce☆43Updated 2 weeks ago
- ☆48Updated this week
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆34Updated 2 months ago
- Toolbox for the analysis of smFISH images.☆59Updated last year
- ☆17Updated last month
- Graph-based Decoding for In Situ Sequencing☆10Updated 4 years ago
- Flow-Registration toolbox for 2P motion compensation☆22Updated 6 months ago
- A collection of LUTs for ImageJ/Fiji☆62Updated 4 years ago
- Pure Python library for reading NIS Elements ND2 images and metadata☆45Updated last month
- Methods for Image-Based Cell Profiling☆50Updated 9 months ago