Alternatives and similar repositories for imagej_plugins

Users that are interested in imagej_plugins are comparing it to the libraries listed below

• ved-sharma / HyperStackReg
  An ImageJ/FIJI plugin for multi-channel Hyperstack alignment (registration)
  ☆13Updated 3 years ago
• FlowRegSuite / flow_registration
  Flow-Registration toolbox for 2P motion compensation
  ☆27Updated 4 months ago
• saalfeldlab / bigwarp
  A tool for manual pointwise deformable registration using bigdataviewer.
  ☆35Updated last month
• miura / MultiStackRegistration
  Modified version of MultiStackRegistration, for use from scripts.
  ☆12Updated 3 years ago
• bleach1by1 / BIRDS_plugin
  BIRDS plug-in on Fiji and attached jar package
  ☆21Updated 4 years ago
• jefferis / fiji-cmtk-gui
  Simple GUI frontend for CMTK image registration tools in Fiji/ImageJ
  ☆13Updated 8 years ago
• embl-cba / elastix-wrapper
  ☆14Updated 11 months ago
• idse / imsane
  ☆12Updated 4 years ago
• CellMigrationLab / Fast4DReg
  Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…
  ☆40Updated 9 months ago
• yu-lab-vt / SynQuant
  A Fiji plugin that automatically quantify synapses from multi-channel fluorescence microscopy images.
  ☆18Updated last year
• DanuserLab / u-shape3D
  Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…
  ☆31Updated last week
• Open-Science-Tools / nd2reader
  Pure Python library for reading NIS Elements ND2 images and metadata
  ☆48Updated last year
• georgeoshardo / SyMBac
  Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.
  ☆22Updated 6 months ago
• haiderriazkhan / CANDLE-J
  Collaborative Approach for eNhanced Denoising under Low-light Excitation
  ☆20Updated 7 months ago
• BiAPoL / blog
  Most of us study and work at the Bio-image Analysis Technology Development group at the DFG Cluster of Excellence “Physics of Life” at th…
  ☆16Updated 7 months ago
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆38Updated 4 years ago
• gszep / FlowAtlas.jl
  an interactive explorer for flow cytometry data
  ☆18Updated last year
• BiAPoL / PoL-BioImage-Analysis-TS-GPU-Accelerated-Image-Analysis
  PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track
  ☆28Updated last year
• AllenCell / cvapipe_analysis
  Analysis of data produced by cvapipe for the variance paper
  ☆24Updated last year
• mastodon-sc / mastodon
  Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.
  ☆80Updated this week
• vianamp / MitoGraph
  Software for Quantifying Mitochondrial Content in Live Cells
  ☆30Updated 7 months ago
• bene51 / 3Dscript
  Create 3D/4D animations using a natural language-based syntax
  ☆61Updated 7 months ago
• saramcardle / FS2K
  Files associated with the From Samples To Knowledge 2025 QuPath training course
  ☆14Updated 9 months ago
• aelefebv / nellie
  Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
  ☆88Updated 2 weeks ago
• BiAPoL / imagej-macro-cheat-sheet
  ☆20Updated 4 years ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆61Updated last year
• JaneliaSciComp / VVDViewer
  3D/4D volumetric rendering of microscopy data
  ☆26Updated 2 months ago
• tractatus / wholebrain
  R package for segmentation, registration and generating web-based brain atlases from microscope images
  ☆93Updated 4 years ago
• HenriquesLab / NanoJ-Core
  Core functionality of NanoJ
  ☆17Updated last year
• fiji / cookbook
  Plugins collated for the Fiji Cookbook
  ☆26Updated 3 years ago