Roestlab / massformer
Tandem Mass Spectrum Prediction with Graph Transformers
☆87Updated 8 months ago
Alternatives and similar repositories for massformer
Users that are interested in massformer are comparing it to the libraries listed below
Sorting:
- Predicting tandem mass spectra from molecules☆91Updated last year
- MassSpecGym: A benchmark for the discovery and identification of molecules (NeurIPS 2024 Spotlight)☆69Updated last week
- Encoding MS/MS spectra using formula transformers for inferring molecular properties☆56Updated 11 months ago
- DreaMS (Deep Representations Empowering the Annotation of Mass Spectra)☆31Updated last month
- Efficiently predicting high resolution mass spectra with graph neural networks☆26Updated last year
- ☆67Updated last month
- Meet FIORA! An in silico fragmentation algorithm designed to predict tandem mass spectra (MS/MS) with high accuracy. Using graph neural n…☆31Updated 2 weeks ago
- Community-Maintained Version of mordred☆68Updated this week
- ☆63Updated 8 months ago
- Predicting MS1 precursor chemical formula from MS/MS data☆19Updated last year
- Awesome papers and codes list of small molecule mass spectrometry-related machine learning methods☆30Updated last month
- Mass Spectrometry for Small Molecules using Deep Learning☆126Updated 3 years ago
- Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity☆61Updated 2 months ago
- A python client for the ClassyFire API☆16Updated 5 years ago
- Python tool for generate fingerprints of a molecule☆77Updated 2 months ago
- A tool for evaluating the predictive performance on activity cliff compounds of machine learning models☆181Updated 3 months ago
- Predicting molecular fingerprint from electron−ionization mass spectrum with deep neural networks☆36Updated last year
- SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository…☆105Updated 3 months ago
- Retrosynthetic prediction with Atom Environments☆37Updated last year
- ☆31Updated 5 months ago
- Official repository for the Deep Docking protocol☆119Updated last year
- ☆16Updated 3 weeks ago
- [Bioinformatics] 3DMolMS: prediction of tandem mass spectra from 3D molecular conformations☆22Updated this week
- DockStream: A Docking Wrapper to Enhance De Novo Molecular Design☆116Updated 2 years ago
- The dataset, code, and software for the paper 'Retention Time Prediction for Chromatographic Enantioseparation by Quantile Geometry-enhan…☆17Updated last year
- ☆125Updated 2 years ago
- Publicly-accessible repo for ACS paper "Rapid Approximate Subset-Based Spectra Prediction for Electron Ionization−Mass Spectrometry" (RAS…☆21Updated 2 years ago
- This repository contains training data for retention time prediction for the identification of metabolites from non-targeted LC-MS based …☆45Updated last month
- Training and prediction scripts for Chemprop models trained on ADMET datasets☆156Updated 7 months ago
- Sequence-to-drug concept adds a perspective on drug design. It can serve as an alternative method to SBDD, particularly for proteins that…☆66Updated last year