abdulrahmanazab / docker-training-neic

Related projects ⓘ

Alternatives and complementary repositories for docker-training-neic

• Midnighter / nextflow-gotchas
  A collection of unexpected challenges and learnings with nextflow and nf-core.
  ☆34Updated last year
• PawseySC / singularity-containers
  Webinars&Tutorial on Containers on HPC and Cloud with Singularity
  ☆26Updated 2 years ago
• FredHutch / easybuild-life-sciences
  Howto and implementation documentation
  ☆21Updated this week
• SciLifeLab / courses
  Course homepages for some of the courses given at SciLifeLab
  ☆21Updated 4 years ago
• seqeralabs / wave-showcase
  Examples showing how to configure Nextflow to run with Wave containers provisioning service
  ☆19Updated last week
• LukeGoodsell / nextflow-vim
  Nextflow plugin for VIM
  ☆48Updated last year
• snakemake / snakemake-github-action
  A Github action for running a Snakemake workflow
  ☆52Updated last year
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆87Updated this week
• grst / nxfvars
  Access nextflow variables from python scripts or notebooks
  ☆21Updated 3 years ago
• nextflow-io / vscode-language-nextflow
  Nextflow language support for Visual Studio Editor
  ☆30Updated this week
• stevetsa / awesome-microbes
  List of computational resources for analyzing microbial sequencing data.
  ☆66Updated last year
• snakemake-workflows / dna-seq-varlociraptor
  A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …
  ☆83Updated last week
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆69Updated this week
• biocorecrg / BioNextflow
  A collection of modules and sub-workflows for Nextflow
  ☆26Updated this week
• jdblischak / smk-simple-slurm
  A simple Snakemake profile for Slurm without --cluster-config
  ☆141Updated 4 months ago
• smithlabcode / preseq
  Software for predicting library complexity and genome coverage in high-throughput sequencing.
  ☆78Updated 2 weeks ago
• NBISweden / workshop-reproducible-research
  NBIS/Elixir course: Tools for Reproducible Research
  ☆57Updated this week
• Oshlack / Lace
  Building SuperTranscripts: A linear representation of transcriptome data
  ☆67Updated 3 years ago
• percyfal / snakemake-rules
  Library of snakemake rules.
  ☆12Updated 6 years ago
• TGAC / earlham-galaxytools
  Galaxy tools and workflows developed at the Earlham Institute
  ☆14Updated 8 months ago
• enasequence / cramtools
  CRAM format specification and java API for read data.
  ☆58Updated 6 years ago
• common-workflow-library / bio-cwl-tools
  CWL CommandLineTool descriptions for biology/life-sciences related applications
  ☆76Updated 3 months ago
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆41Updated last year
• nf-core / readsimulator
  A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
  ☆27Updated 3 weeks ago
• snakemake-workflows / cookiecutter-snakemake-workflow
  A cookiecutter template for Snakemake workflows
  ☆57Updated 2 years ago
• carpentries-incubator / workflows-nextflow
  Workflow management with Nextflow and nf-core
  ☆23Updated this week
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 6 years ago
• pcingola / SnpSift
  ☆35Updated last month
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆85Updated this week
• bcgsc / orca
  Genomics Research Container Architecture
  ☆48Updated 5 years ago