lcampillos / Medical-NER
Notebook for BERT medical named entity recognition
☆38Updated 2 years ago
Alternatives and similar repositories for Medical-NER:
Users that are interested in Medical-NER are comparing it to the libraries listed below
- ☆38Updated 2 years ago
- A fine-tuned BERT using EHR notes.☆14Updated 5 years ago
- NER and Relation Extraction from Electronic Health Records (EHR).☆84Updated 2 years ago
- Clinical Text Summarization with Syntax-Based Negation and Semantic Concept Identification☆22Updated 4 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆146Updated last year
- ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)☆73Updated last year
- Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)☆58Updated 2 years ago
- ☆96Updated 2 years ago
- Weakly supervised medical named entity classification☆70Updated 2 years ago
- Quantifying biases in BERT embeddings pretrained on MIMIC-III clinical notes☆23Updated 3 years ago
- A project for developing transformer-based models for clinical relation extraction☆127Updated last year
- ☆61Updated 3 years ago
- Clinical NER with UMLS lookup☆22Updated 4 years ago
- Code for the EACL 2021 Paper: Clinical Outcome Prediction from Admission Notes using Self-Supervised Knowledge Integration☆89Updated 5 months ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆30Updated 7 months ago
- ☆22Updated 2 years ago
- This repository contains the code used for distillation and fine-tuning of compact biomedical transformers that have been introduced in t…☆17Updated 9 months ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 2 years ago
- pyTorch implementation of Recurrence over BERT (RoBERT) based on this paper https://arxiv.org/abs/1910.10781 and comparison with pyTorch …☆80Updated 2 years ago
- ☆17Updated 9 months ago
- A collection of papers on automated medical coding from free-texts☆124Updated 3 weeks ago
- Biomedical Data-to-Text Generation via Fine-Tuning Transformers☆29Updated 3 years ago
- Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-the…☆105Updated 3 years ago
- Discovering Related Clinical Concepts using Large Amounts of Clinical Notes. An unsupervised graphical approach to mine related concepts …☆26Updated 6 years ago
- Applying BERT to named entity recognition in English and Russian.☆162Updated 2 years ago
- This is the code for Negation and Speculation Cue Detection and Scope Resolution using BERT, XLNet and RoBERTa☆31Updated 3 years ago
- A Python Natural Language Processing Toolkit for Medical Text Generation☆75Updated 2 months ago
- Text summarization with python and transformer☆13Updated last year
- ☆57Updated last year
- ☆210Updated last month