dbmi-pitt / public-PDDI-analysis
migrates from swat-4-med-safety/SW-DDI-catalog/drug-drug-interactions
☆35Updated 7 years ago
Alternatives and similar repositories for public-PDDI-analysis:
Users that are interested in public-PDDI-analysis are comparing it to the libraries listed below
- Predicting adverse drug reactions from a knowledge graph☆28Updated 3 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆59Updated 3 years ago
- Table compiling the list of biomedically-related corpora available for named entity recognition (and some also suitable for association d…☆18Updated 6 years ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 2 years ago
- Retrieve and process PubTator annotations☆43Updated last year
- Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and hea…☆56Updated 6 years ago
- Method for drug repurposing from knowledge graphs and literature☆33Updated 4 years ago
- Public release of the DeepPhe analytic software☆30Updated 2 years ago
- An information extraction system for free-text eligibility criteria☆36Updated 6 years ago
- Named Entity Recognition for biomedical entities☆47Updated 2 years ago
- a module to calculate the MeSH similarity☆24Updated 3 years ago
- Medical Relations and Entities Extraction☆35Updated 2 years ago
- Clinical Concept Extraction with Contextual Word Embedding☆40Updated 4 years ago
- Detecting drug-drug interaction (DDI) has become a vital part of public health safety. This project is an implementation of NLP based app…☆16Updated 7 years ago
- CollaboNet for Biomedical Named Entity Recognition☆48Updated 5 years ago
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towa…☆15Updated 5 years ago
- development and intrinsic evaluation of drug related word embeddings using PubMed abstracts and DrugBank☆14Updated 7 years ago
- Cataloging pharmacotherapies in clinical trial from ClinicalTrials.gov☆26Updated 8 years ago
- Web interface that allows users to perform computer-assisted text annotation☆16Updated last year
- Grounding of biomedical named entities with contextual disambiguation☆39Updated 2 months ago
- Repository for student projects within biomedical text mining from Lund University☆50Updated last year
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- Machine-learning based pipeline relying on LambdaMART currently used in PubMed for relevance (Best Match) searches☆40Updated 6 years ago
- ☆11Updated 6 years ago
- Turning Ontologies Plus Annotation Properties into Vectors☆35Updated 4 years ago
- NLP framework in python for entity recognition and relationship extraction☆112Updated 2 years ago
- a Python tool to extract and structure numeric lab test comparison statements from text☆22Updated last year
- A python implementation of the Ensemble Biclustering for Classification (EBC) algorithm. EBC is a co-clustering algorithm that allows you…☆20Updated 7 years ago
- A framework for keeping biomedical text mining result up-to-date☆41Updated 4 years ago
- Health knowledge graph for 157 diseases and 491 symptoms, learned from >270,000 patients' data☆99Updated 4 years ago