kianho / pconpy
a python module for generating protein contact maps and distance maps
☆46Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for pconpy
- A Python 3 version of the protein descriptor package propy☆39Updated last year
- Paratope Prediction using Deep Learning☆59Updated last year
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆49Updated 2 years ago
- Fast and easy contact prediction.☆35Updated 5 months ago
- mGPfusion is a Gaussian process based method for predicting stability changes upon single and multiple mutations of proteins that comple…☆15Updated 6 years ago
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆53Updated 2 years ago
- Fully convolutional neural networks for protein residue-residue contact prediction☆44Updated 5 years ago
- ☆29Updated 4 years ago
- ☆34Updated 3 years ago
- ☆32Updated 4 years ago
- Deep residual neural network for protein contact/distance prediction developed by Xu group☆77Updated 4 years ago
- Deep convolutional neural networks for protein contact map prediction☆23Updated 5 years ago
- Calculation of interatomic interactions in molecular structures☆69Updated 2 years ago
- Code for "Protein Docking Model Evaluation by Graph Neural Networks"☆58Updated last year
- Contact map alignment☆39Updated 3 years ago
- Direct coupling analysis software for protein and RNA sequences☆47Updated last year
- DLSCORE: A deep learning based scoring function for predicting protein-ligand binding affinity☆49Updated last year
- PyDock Tutorial☆30Updated 6 years ago
- Recurrent Geometric Network in Pytorch☆29Updated 4 years ago
- An open-source library for the analysis of protein interactions.☆29Updated 2 years ago
- Computer aided proximal decaging as a universal strategy for temporal protein activation☆21Updated 5 years ago
- ☆35Updated 2 years ago
- Improved ab initio protein structure reconstruction☆15Updated 6 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆22Updated 8 months ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆33Updated 4 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆80Updated last year
- ☆25Updated 2 years ago
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆32Updated 2 years ago
- Help file for running the scripts to learn and evaluate graph convolution networks for epitope and paratope prediction☆31Updated 4 years ago
- Neural networks for deep mutational scanning data☆66Updated last week