interpretAMR / AMRrulesLinks
Interpretative standards for AMR genotypes
☆21Updated this week
Alternatives and similar repositories for AMRrules
Users that are interested in AMRrules are comparing it to the libraries listed below
Sorting:
- A pipeline for bioinformatics analysis of bacterial genomes☆29Updated 3 weeks ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated 8 months ago
- Calculate assocations between genes and traits☆23Updated 2 months ago
- UPHL's Reference Free Pipeline☆26Updated 3 weeks ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 7 months ago
- Intra-species bacterial contamination detection☆25Updated 3 months ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆27Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last week
- Bacterial GWAS analysis☆40Updated last week
- Bacterial surveillance pipeline.☆24Updated 3 weeks ago
- REcombination BARcode detector.☆13Updated last year
- Predict plasmids from uncorrected long read data☆39Updated 5 years ago
- Organism-specific interpretation of AMR genotypes☆12Updated last year
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 2 weeks ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- Genome size estimation from long read overlaps☆56Updated last month
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated 3 months ago
- Recombination-free trees☆58Updated 2 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 3 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 10 months ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆22Updated 2 years ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated 10 months ago
- Plasmid exploration of bacterial genomes☆18Updated 3 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- Plasmid analysis using rearrangement distances☆42Updated last week
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated last month
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆12Updated last year
- Phylotype your strains using Clermont's 2013 method: ezclermont.org☆10Updated 2 years ago