gwcbi / haphpipeLinks
NGS viral assembly and population genetics
☆9Updated 4 years ago
Alternatives and similar repositories for haphpipe
Users that are interested in haphpipe are comparing it to the libraries listed below
Sorting:
- Tool for analysing viral diversity from High Throughput Sequencing☆12Updated 2 years ago
- Systematic ProtEin AnnotatoR☆19Updated 9 months ago
- Main development repository for SpreadGL☆19Updated 10 months ago
- ☆9Updated 3 years ago
- This is a simple introductory tutorial to help you get started with using BEAST2 and its accomplices.☆10Updated last month
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆24Updated 2 years ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Updated last year
- Quasitools is a collection of tools for analysing viral quasispecies data.☆27Updated 3 years ago
- ☆26Updated 2 years ago
- ☆14Updated 5 years ago
- ☆28Updated 3 years ago
- An RNA virus strain-level identification tool for short reads.☆21Updated last year
- Remove host contaminants from sequencing files☆9Updated 5 years ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆21Updated 8 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated last year
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆23Updated 6 months ago
- Rapid, Alignment-free, Phylogenetic Placement via Ancestral Sequences☆9Updated last year
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Updated 8 years ago
- Database of virus RdRP barcode sequences☆16Updated last year
- Influenza genome analysis Nextflow workflow☆23Updated last week
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- Read contamination removal☆25Updated last year
- Local Lineage and Monophyly Assessment☆16Updated 4 years ago
- ☆9Updated 2 years ago
- BEAST+BEAGLE compiled with NVIDIA CUDA☆11Updated last year
- ☆15Updated last year
- A snakemake workflow for metagenomic projects☆14Updated 2 years ago
- transposable element typing pipeline☆18Updated last year
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17Updated 2 years ago