davisidarta / fastlapmapLinks
Fast Laplacian Eigenmaps: lightweight multicore LE for non-linear dimensional reduction with minimal memory usage. Outperforms sklearn's implementation and escalates linearly beyond 10e6 samples.
☆23Updated 3 years ago
Alternatives and similar repositories for fastlapmap
Users that are interested in fastlapmap are comparing it to the libraries listed below
Sorting:
- PyTorch implementation of BasisVAE: Translation-invariant feature-level clustering with Variational Autoencoders☆42Updated 5 years ago
- Graph regularized nonnegative matrix factorization (GNMF) in Python☆45Updated 5 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆59Updated 4 years ago
- Tools for building and manipulating graphs in Python☆43Updated last month
- Initialization is critical for preserving global data structure in both t-SNE and UMAP☆23Updated 4 years ago
- Here we address the global structure preservation by tSNE and UMAP☆47Updated 5 years ago
- Contrastive PCA☆226Updated 11 months ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆42Updated 2 years ago
- A data analysis package for high-dimensional, multi-block data.☆12Updated 3 years ago
- Integrative orthogonal non-negative matrix factorization☆32Updated 6 years ago
- Systematically learn and evaluate manifolds from high-dimensional data☆101Updated 3 weeks ago
- Python Wrapper for FIt-SNE☆45Updated 4 years ago
- Attraction-Repulsion Spectrum in Neighbor Embeddings☆31Updated 3 years ago
- Hierarchical graph clustering☆38Updated 7 years ago
- Contrastive neighbor embeddings☆55Updated last month
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆22Updated 2 years ago
- Learning disentangled representations of single-cell data for high-quality generation☆16Updated last year
- c-lasso: a Python package for constrained sparse regression and classification☆32Updated 4 years ago
- A Library for Denoising Single-Cell Data with Random Matrix Theory☆37Updated 2 years ago
- ☆11Updated 4 months ago
- Explaining dimensionality results using SHAP values☆55Updated 8 months ago
- A Python package for General Graphical Lasso computation☆37Updated 7 months ago
- ☆33Updated 5 months ago
- Testing if UMAP/tSNE overfit their intrinsic dimensionality☆15Updated 2 years ago
- Bootstrap Elastic net regression from Time Series is a vector-autoregressive approach to causal inference from gene expression time serie…☆20Updated 2 years ago
- Parallel opt-SNE implementation with Python wrapper☆37Updated 3 years ago
- topological data analysis of population-scale microbiomes☆31Updated 2 years ago
- A python library for generating a clustered heatmap with dendrograms.☆34Updated 3 years ago
- Density-preserving data visualization tools den-SNE and densMAP☆114Updated 4 years ago
- Probabilistic contrastive principal component analysis (PCPCA)☆24Updated 3 years ago