Alternatives and similar repositories for shinyGEO

Users that are interested in shinyGEO are comparing it to the libraries listed below

• ngless-toolkit / ng-meta-profiler

  View on GitHub
  Profiler for metagenomics based on NGLess
  ☆13Feb 22, 2024Updated last year
• PersonalizedOncology / ClinVAP

  View on GitHub
  Clinical Variant Annotation Pipeline
  ☆10Apr 21, 2020Updated 5 years ago
• elizabethdorans / pgBoost

  View on GitHub
  ☆16Oct 23, 2025Updated 3 months ago
• jminnier / STARTapp

  View on GitHub
  The START App: R Shiny Transcriptome Analysis Resource Tool
  ☆88Nov 11, 2020Updated 5 years ago
• nik01010 / dashboardThemeSwitcher

  View on GitHub
  Live theme switcher for R Shinydashboard applications
  ☆13Jul 13, 2022Updated 3 years ago
• huwenboshi / s-ldxr

  View on GitHub
  Stratified squared trans-ethnic genetic correlation
  ☆14May 12, 2022Updated 3 years ago
• caporaso-lab / tax-credit-data

  View on GitHub
  raw data from tax-credit project
  ☆14Sep 19, 2019Updated 6 years ago
• carlaml / LDpred-funct

  View on GitHub
  Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337
  ☆18Aug 30, 2024Updated last year
• StantonLabDartmouth / AppScanGEO

  View on GitHub
  Source code for ScanGEO Shiny App
  ☆15Apr 18, 2022Updated 3 years ago
• AkshathaPrasanna / Clin-mNGS

  View on GitHub
  Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data
  ☆18Jun 29, 2021Updated 4 years ago
• cuelee / pleio

  View on GitHub
  ☆19Aug 7, 2025Updated 6 months ago
• KasperSkytte / AutoTax

  View on GitHub
  Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples
  ☆20Nov 23, 2024Updated last year
• ajitjohnson / imsig

  View on GitHub
  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
  ☆28Jan 9, 2021Updated 5 years ago
• mhalushka / miRge

  View on GitHub
  miRge - microRNA alignment software for small RNA-seq data, now at v2.0
  ☆28Mar 23, 2022Updated 3 years ago
• cgrace1978 / manhplot

  View on GitHub
  Manhattan++
  ☆28Feb 13, 2024Updated 2 years ago
• wejlab / animalcules

  View on GitHub
  R shiny app for interactive microbiome analysis
  ☆56Jun 5, 2025Updated 8 months ago
• qlu-lab / SUPERGNOVA

  View on GitHub
  ☆30Oct 18, 2021Updated 4 years ago
• jmzeng1314 / idmap2

  View on GitHub
  ☆29Feb 25, 2020Updated 5 years ago
• namphuon / ViFi

  View on GitHub
  Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.
  ☆30Jul 13, 2021Updated 4 years ago
• jmzeng1314 / idmap1

  View on GitHub
  ☆31Feb 25, 2020Updated 5 years ago
• ravel-lab / speciateIT

  View on GitHub
  Fast, accurate taxonomic assignments for the human vaginal microbiota
  ☆11Updated this week
• snewhouse / awesome-genetics-software

  View on GitHub
  A list of cool software for genetic analysis and the like
  ☆12Sep 21, 2018Updated 7 years ago
• MoTrPAC / MotrpacRatTraining6mo

  View on GitHub
  Analysis of the MoTrPAC endurance exercise training study in 6-month-old rats
  ☆11Sep 30, 2024Updated last year
• tsznxx / PyCircos

  View on GitHub
  Draw Circos in Python
  ☆31Sep 19, 2022Updated 3 years ago
• jmzeng1314 / idmap3

  View on GitHub
  ☆33Feb 25, 2020Updated 5 years ago
• metabarcoding / obitools4

  View on GitHub
  ☆14Updated this week
• OpenGenomics / mc3

  View on GitHub
  ☆35Sep 28, 2020Updated 5 years ago
• asafpr / RILseq

  View on GitHub
  RILseq computational protocol
  ☆10Apr 3, 2022Updated 3 years ago
• patzaw / bscui

  View on GitHub
  Build SVG Custom User Interface in R, rmd, qmd and Shiny
  ☆20Apr 10, 2025Updated 10 months ago
• ekfchan / evachan.org-Rscripts

  View on GitHub
  Handy genetics-related R scripts
  ☆32Nov 22, 2019Updated 6 years ago
• jpouch / qPCR-Biomark

  View on GitHub
  Biomark Fluidigm qPCR data set: processing and analysis
  ☆10Apr 8, 2024Updated last year
• thewonlab / H-MAGMA

  View on GitHub
  ☆35Jun 15, 2023Updated 2 years ago
• jaeyunsung / GMHI_2020

  View on GitHub
  Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profili…
  ☆36Sep 23, 2020Updated 5 years ago
• jasdumas / shinyGEO

  View on GitHub
  Gene Expression Omnibus Analysis with Shiny
  ☆40Jun 2, 2022Updated 3 years ago
• caporaso-lab / mockrobiota

  View on GitHub
  A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.
  ☆83May 14, 2019Updated 6 years ago
• Syksy / curatedPCaData

  View on GitHub
  Bioconductor R-package: Curated Prostate Cancer Data
  ☆11Oct 1, 2024Updated last year
• Svvord / iMAP

  View on GitHub
  A novel unsupervised batch removal framework, called iMAP, based on neural networks.
  ☆35Jan 12, 2022Updated 4 years ago
• CCCKW / mHapTk

  View on GitHub
  ☆10Jul 13, 2022Updated 3 years ago
• opentargets / issues

  View on GitHub
  Issue tracker for the Open Targets Platform
  ☆13Jul 8, 2025Updated 7 months ago