galaxyproject / galaxyLinks
Data intensive science for everyone.
☆1,592Updated this week
Alternatives and similar repositories for galaxy
Users that are interested in galaxy are comparing it to the libraries listed below
Sorting:
- Bioinformatics containers☆744Updated 2 weeks ago
- Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale product…☆1,032Updated last week
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,011Updated last year
- Cloud-native genomic dataframes and batch computing☆1,026Updated this week
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,352Updated this week
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆849Updated 2 months ago
- Specification for the Workflow Description Language (WDL).☆824Updated last week
- Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations☆697Updated this week
- Official code repository for GATK versions 4 and up☆1,847Updated this week
- scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resourc…☆966Updated last week
- bedtools - the swiss army knife for genome arithmetic☆998Updated 5 months ago
- A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.☆1,025Updated last month
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆1,648Updated 5 months ago
- tools for working with genome variation graphs☆1,229Updated last week
- Tools (written in C using htslib) for manipulating next-generation sequencing data☆1,774Updated 2 weeks ago
- SRA Tools☆1,254Updated this week
- A DSL for data-driven computational pipelines☆3,127Updated this week
- C library for high-throughput sequencing data formats☆874Updated last week
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,163Updated 2 months ago
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆821Updated last year
- Toolkit for processing sequences in FASTA/Q formats☆1,489Updated 3 months ago
- A collection of Galaxy-related training material☆339Updated this week
- Incubator for useful bioinformatics code, primarily in Python and R☆630Updated 7 months ago
- Trinity RNA-Seq de novo transcriptome assembly☆866Updated 6 months ago
- This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.gith…☆801Updated last week
- Common Workflow Language reference implementation☆351Updated 2 weeks ago
- Scripts to download genomes from the NCBI FTP servers☆1,026Updated last month
- A curated list of nextflow based pipelines☆606Updated 2 months ago
- Docker Images tracking the stable Galaxy releases.☆234Updated 6 months ago
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆502Updated this week