Data intensive science for everyone.
☆1,746Mar 4, 2026Updated this week
Alternatives and similar repositories for galaxy
Users that are interested in galaxy are comparing it to the libraries listed below
Sorting:
- Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training m…☆105Updated this week
- Tool Shed repositories maintained by the Intergalactic Utilities Commission☆197Updated this week
- Galaxy Community Hub☆135Updated this week
- A collection of Galaxy-related training material☆349Feb 28, 2026Updated last week
- Docker Images tracking the stable Galaxy releases.☆236Feb 18, 2026Updated 2 weeks ago
- A Python library for interacting with the Galaxy API☆95Feb 21, 2026Updated 2 weeks ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,425Updated this week
- Galaxy Workflows maintained by the Intergalactic Workflow Commission☆48Updated this week
- Handy command line utility for Galaxy administrators☆24Sep 15, 2025Updated 5 months ago
- ENA upload cli - script your Open Data upload to the European Nucleotide Archive☆29Feb 9, 2026Updated 3 weeks ago
- A DSL for data-driven computational pipelines☆3,307Updated this week
- Official git repository for Biopython (originally converted from CVS)☆4,911Feb 25, 2026Updated last week
- Request execution of Galaxy SARS-CoV-2 variation analysis workflows on input data you provide.☆20Dec 13, 2021Updated 4 years ago
- Galaxy Admin Training☆61Dec 5, 2025Updated 3 months ago
- Galaxy Tool wrappers☆122Feb 26, 2026Updated last week
- Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures☆127Feb 3, 2023Updated 3 years ago
- Official code repository for GATK versions 4 and up☆1,913Feb 27, 2026Updated last week
- Library for managing Galaxy plugins - tools, index data, and workflows.☆32Feb 24, 2026Updated last week
- UseGalaxy.EU website (compiled version https://github.com/usegalaxy-eu/usegalaxy-eu.github.io)☆22Updated this week
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆1,707Mar 22, 2025Updated 11 months ago
- Conda recipes for the bioconda channel.☆1,792Updated this week
- Bioinformatics containers☆777Feb 4, 2026Updated last month
- Ansible playbooks for Galaxy Server deployment☆24Oct 14, 2025Updated 4 months ago
- Collection of scripts for automated SARS-CoV-2 genome surveillance.☆24Sep 19, 2023Updated 2 years ago
- List of tools included in https://usegalaxy.eu☆34Updated this week
- A curated list of awesome Bioinformatics libraries and software.☆3,882Updated this week
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,025Aug 24, 2024Updated last year
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,297Jan 22, 2026Updated last month
- Galaxy Language Server to help in Galaxy (https://galaxyproject.org/) tool wrappers development.☆28Feb 25, 2026Updated last week
- Ansible playbook for managing UseGalaxy.eu infrastructure.☆25Updated this week
- Tools (written in C using htslib) for manipulating next-generation sequencing data☆1,855Feb 26, 2026Updated last week
- Toolkit for processing sequences in FASTA/Q formats☆1,531Jun 1, 2025Updated 9 months ago
- Cloud-native genomic dataframes and batch computing☆1,050Updated this week
- DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.☆3,635Oct 21, 2025Updated 4 months ago
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,520Feb 27, 2026Updated last week
- Scripts to download genomes from the NCBI FTP servers☆1,063Jul 28, 2025Updated 7 months ago
- Galaxy Workflow Format 2☆13Updated this week
- 🔝 The amazing Galaxy Tour Builder web extension. // See demo 👉☆17Jun 2, 2020Updated 5 years ago
- Common Workflow Language reference implementation☆362Updated this week