Alternatives and similar repositories for GERNERMED

Users that are interested in GERNERMED are comparing it to the libraries listed below

• kbressem / bert-for-radiology
  BERT implementation for radiology full-text reports
  ☆11Updated 5 years ago
• nedap / deidentify
  A Python library to de-identify medical records with state-of-the-art NLP methods.
  ☆142Updated 2 months ago
• frankkramer-lab / GPTNERMED
  GPTNERMED is a language model-generated, synthetic dataset and an open neural NER model for medical entities designed for German data.
  ☆16Updated 2 years ago
• medspacy / medspacy
  Library for clinical NLP with spaCy.
  ☆631Updated 6 months ago
• CogStack / MedCATtrainer
  A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
  ☆85Updated 5 months ago
• suamin / ICD-BERT
  ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)
  ☆76Updated 2 years ago
• drivendataorg / snomed-ct-entity-linking
  Winners of the SNOMED CT Entity Linking Challenge
  ☆44Updated last year
• UMEssen / FHIR-PYrate
  FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured informat…
  ☆74Updated this week
• CogStack / MedCAT
  Medical Concept Annotation Tool
  ☆522Updated 6 months ago
• aphp / edsnlp
  Modular, fast NLP framework, compatible with Pytorch and spaCy, offering tailored support for French clinical notes.
  ☆150Updated last week
• CogStack / CogStack-SemEHR
  Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
  ☆88Updated 3 years ago
• smitkiri / ehr-relation-extraction
  NER and Relation Extraction from Electronic Health Records (EHR).
  ☆90Updated 3 years ago
• kormilitzin / med7
  ☆221Updated last year
• som-shahlab / trove
  Weakly supervised medical named entity classification
  ☆72Updated 3 years ago
• umassbento / ehrbert
  A fine-tuned BERT using EHR notes.
  ☆14Updated 6 years ago
• fhirpack / fhirpack
  FHIR Python Analysis Client and Kit (FHIRPACK) is a general purpose FHIR client that simplifies the access, analysis and representation o…
  ☆49Updated 2 years ago
• CogStack / MedCATservice
  Running MedCAT as a RESTful web service
  ☆22Updated 7 months ago
• JHLiu7 / EarlyDRGPrediction
  ☆12Updated 2 years ago
• hpi-dhc / xmen
  ✖️MEN - A Modular Toolkit for Cross-Lingual Medical Entity Normalization
  ☆29Updated last year
• bvanaken / clinical-outcome-prediction
  Code for the EACL 2021 Paper: Clinical Outcome Prediction from Admission Notes using Self-Supervised Knowledge Integration
  ☆99Updated last year
• lcampillos / Medical-NER
  Notebook for BERT medical named entity recognition
  ☆43Updated 3 years ago
• OHNLP / MedTagger
  MedTagger is a light weight clinical NLP system built upon Apache UIMA.
  ☆71Updated 9 months ago
• LHNCBC / skr_web_python_api
  SKR Web API: Python implementation
  ☆42Updated 2 years ago
• ncbi-nlp / NegBio
  High-performance tool for negation and uncertainty detection in radiology reports
  ☆164Updated 2 years ago
• kavgan / clinical-concepts
  Discovering Related Clinical Concepts using Large Amounts of Clinical Notes. An unsupervised graphical approach to mine related concepts …
  ☆25Updated 8 years ago
• simonlevine / clinical-longformer
  ☆38Updated 3 years ago
• McGill-NLP / medal
  Large medical text dataset curated for abbreviation disambiguation, designed for natural language understanding pre-training in the medic…
  ☆282Updated 2 years ago
• vmenger / deduce
  Deduce: de-identification method for Dutch medical text
  ☆64Updated 5 months ago
• rcolinp / clinical_informatics_umls
  An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…
  ☆48Updated last year
• dreji18 / Bio-Epidemiology-NER
  Recognize bio-medical entities from a text corpus
  ☆131Updated 2 years ago