Alternatives and similar repositories for GERNERMED:

Users that are interested in GERNERMED are comparing it to the libraries listed below

• frankkramer-lab / GERNERMED-pp
  GERNERMED++ is a transfer-learning-based open neural NER model for medical entities designed for German data.
  ☆9Updated last year
• kbressem / bert-for-radiology
  BERT implementation for radiology full-text reports
  ☆11Updated 4 years ago
• suamin / ICD-BERT
  ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)
  ☆74Updated 2 years ago
• hpi-dhc / xmen
  ✖️MEN - A Modular Toolkit for Cross-Lingual Medical Entity Normalization
  ☆26Updated 3 months ago
• som-shahlab / trove
  Weakly supervised medical named entity classification
  ☆73Updated 2 years ago
• CogStack / CogStack-SemEHR
  Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
  ☆89Updated 2 years ago
• fhirpack / fhirpack
  FHIR Python Analysis Client and Kit (FHIRPACK) is a general purpose FHIR client that simplifies the access, analysis and representation o…
  ☆48Updated last year
• medspacy / medspacy
  Library for clinical NLP with spaCy.
  ☆564Updated 3 weeks ago
• kormilitzin / med7
  ☆215Updated 4 months ago
• lisavirginia / clinical-abbreviations
  ☆64Updated 4 years ago
• kavgan / clinical-concepts
  Discovering Related Clinical Concepts using Large Amounts of Clinical Notes. An unsupervised graphical approach to mine related concepts …
  ☆26Updated 7 years ago
• UMEssen / FHIR-PYrate
  FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured informat…
  ☆63Updated 3 months ago
• simonlevine / clinical-longformer
  ☆38Updated 3 years ago
• OHNLP / MedTagger
  MedTagger is a light weight clinical NLP system built upon Apache UIMA.
  ☆67Updated this week
• CogStack / MedCATtutorials
  General tutorials for the setup and use of MedCAT.
  ☆37Updated this week
• Machine-Learning-for-Medical-Language / cnlp_transformers
  Transformers for Clinical NLP
  ☆24Updated last week
• apache / ctakes
  Apache cTAKES is a Natural Language Processing (NLP) platform for clinical text.
  ☆66Updated 3 weeks ago
• MLD3 / FIDDLE
  FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…
  ☆92Updated 10 months ago
• IHTSDO / llm-chain-entity-extraction
  ☆24Updated 3 months ago
• CogStack / MedCATtrainer
  A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
  ☆80Updated last week
• dchang56 / snomed_kge
  ☆28Updated 4 years ago
• lcampillos / Medical-NER
  Notebook for BERT medical named entity recognition
  ☆40Updated 2 years ago
• smitkiri / ehr-relation-extraction
  NER and Relation Extraction from Electronic Health Records (EHR).
  ☆88Updated 3 years ago
• StefanoTrv / simple_icd_10_CM
  A simple python library for ICD-10-CM codes
  ☆67Updated 3 months ago
• uf-hobi-informatics-lab / ClinicalTransformerNER
  a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms
  ☆147Updated last year
• nedap / deidentify
  A Python library to de-identify medical records with state-of-the-art NLP methods.
  ☆134Updated last year
• jenojp / extractacy
  Spacy pipeline object for extracting values that correspond to a named entity (e.g., birth dates, account numbers, laboratory results)
  ☆54Updated 2 years ago
• bvanaken / clinical-outcome-prediction
  Code for the EACL 2021 Paper: Clinical Outcome Prediction from Admission Notes using Self-Supervised Knowledge Integration
  ☆94Updated 8 months ago
• umassbento / ehrbert
  A fine-tuned BERT using EHR notes.
  ☆14Updated 5 years ago
• frankkramer-lab / GPTNERMED
  GPTNERMED is a language model-generated, synthetic dataset and an open neural NER model for medical entities designed for German data.
  ☆16Updated last year