kbressem / bert-for-radiology
BERT implementation for radiology full-text reports
☆11Updated 4 years ago
Alternatives and similar repositories for bert-for-radiology:
Users that are interested in bert-for-radiology are comparing it to the libraries listed below
- Python Radiology Text Analysis System☆13Updated last year
- General tutorials for the setup and use of MedCAT.☆36Updated last month
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- High-performance tool for negation and uncertainty detection in radiology reports☆159Updated last year
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆41Updated last year
- High-performance tool for negation and uncertainty detection in radiology reports☆15Updated 9 months ago
- A fine-tuned BERT using EHR notes.☆14Updated 5 years ago
- ☆96Updated 2 years ago
- Combining Automatic Labelers and Expert Annotations for Accurate Radiology Report Labeling Using BERT☆120Updated 9 months ago
- This repository contains the source code for the Semantic Knowledge Extractor Tool (SKET). SKET is an unsupervised hybrid knowledge extra…☆12Updated last year
- all scripts used in gatortron project☆113Updated last year
- ☆210Updated 2 months ago
- GERNERMED is the first open neural NER model for medical entities designed for German data.☆17Updated last year
- A deidentifier / deidentification pipeline developed by Stanford and Penn as part of the MIDRC organization.☆82Updated 8 months ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆91Updated 8 months ago
- Code and pretrained model for paper "Learning to Summarize Radiology Findings"☆80Updated 5 years ago
- Predicting ICD Codes from Clinical Notes☆57Updated 4 years ago
- Weakly supervised medical named entity classification☆70Updated 2 years ago
- NER and Relation Extraction from Electronic Health Records (EHR).☆85Updated 2 years ago
- Transformers for Clinical NLP☆23Updated 2 weeks ago
- Winners of the SNOMED CT Entity Linking Challenge☆29Updated 10 months ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆55Updated last year
- A near real-time named-entity recognizer☆59Updated 8 months ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆30Updated 8 months ago
- This is the implementation of the 'VSGRU' model mentioned in our paper 'Automated Radiology Report Generation using Conditioned Transform…☆17Updated 6 months ago
- Expert-Curated Oncology Reports to Advance Language Model Inference☆27Updated 9 months ago
- init☆12Updated 2 months ago
- Clinical text summarization by adapting large language models☆133Updated 6 months ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆79Updated 2 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆79Updated this week