kbressem / bert-for-radiologyLinks
BERT implementation for radiology full-text reports
☆11Updated 5 years ago
Alternatives and similar repositories for bert-for-radiology
Users that are interested in bert-for-radiology are comparing it to the libraries listed below
Sorting:
- Python Radiology Text Analysis System☆16Updated 2 years ago
- High-performance tool for negation and uncertainty detection in radiology reports☆163Updated 2 years ago
- Medical Concept Annotation Tool☆511Updated 3 months ago
- General tutorials for the setup and use of MedCAT.☆40Updated 6 months ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆90Updated 2 years ago
- Med-BERT, contextualized embedding model for structured EHR data☆307Updated last year
- This repository contains the source code for the Semantic Knowledge Extractor Tool (SKET). SKET is an unsupervised hybrid knowledge extra…☆13Updated 2 years ago
- Predicting ICD Codes from Clinical Notes☆64Updated 5 years ago
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)☆430Updated 3 years ago
- Intelligent Word Embeddings of Free-Text Radiology Reports☆24Updated 6 years ago
- Clinical text summarization by adapting large language models☆149Updated last year
- all scripts used in gatortron project☆126Updated 2 years ago
- Open source clinical text de-identification☆144Updated last year
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆48Updated last year
- System for Medical Concept Extraction and Linking☆423Updated last year
- Transformers for Clinical NLP☆25Updated 3 months ago
- A deidentifier / deidentification pipeline developed by Stanford and Penn as part of the MIDRC organization.☆93Updated last year
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆85Updated 2 months ago
- Library for clinical NLP with spaCy.☆614Updated 3 months ago
- Expert-Curated Oncology Reports to Advance Language Model Inference☆30Updated last year
- ☆220Updated 11 months ago
- Weakly supervised medical named entity classification☆73Updated 2 years ago
- A fine-tuned BERT using EHR notes.☆14Updated 6 years ago
- A new collection of 1.7k doctor-patient conversations and corresponding clinical notes/summaries.☆100Updated 5 months ago
- ☆52Updated 2 years ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆70Updated 6 months ago
- Large medical text dataset curated for abbreviation disambiguation, designed for natural language understanding pre-training in the medic…☆279Updated 2 years ago
- A python package for removing duplicate text in clinical notes or other documents☆38Updated 5 years ago
- Combining Automatic Labelers and Expert Annotations for Accurate Radiology Report Labeling Using BERT☆147Updated 3 months ago
- Notebooks for working with The Cancer Imaging Archive datasets. Have you written one? Submit a PR!☆126Updated this week