explodecomputer / simulateGPLinks
R package to simulate genotype-phenotype maps and analyse them
☆9Updated last year
Alternatives and similar repositories for simulateGP
Users that are interested in simulateGP are comparing it to the libraries listed below
Sorting:
- An R package for generating comparative regional association plots☆18Updated 7 months ago
- Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).☆13Updated 2 years ago
- Primo☆16Updated 3 years ago
- Create LocusZoom-style plots in R.☆22Updated 2 years ago
- Toy simulations and analyses of heritability and genetic differences☆11Updated last year
- Simulate GWAS data from an arbitrary DAG☆11Updated 3 weeks ago
- ☆10Updated 2 years ago
- genetic correlation between phenotypes in the UK biobank☆12Updated last year
- DENTIST (Detecting Errors iN analyses of summary staTISTics) is a QC tool for summary-data-based analyses.☆26Updated last year
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆18Updated 2 years ago
- Adding random effects model to the METAL software☆13Updated 2 years ago
- Tissue of ACTion scores for Investigating Complex trait-Associated Loci☆13Updated 4 years ago
- hJAM is a hierarchical model which unifies the framework of Mendelian Randomization and Transcriptome-wide association studies.☆9Updated last year
- VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…☆17Updated last year
- A rapido and lightweight method for PGS computation☆14Updated 5 months ago
- cEll tyPe enrIChment☆15Updated 2 years ago
- Effective Computing—Resources for Computational Biologists☆26Updated 5 years ago
- Code and simulations using interaction-LD score regression☆13Updated last year
- ☆17Updated last year
- R function to generate Manhattan plots using ggplot☆9Updated 5 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- Code used for the single-cell RNA-Seq batch effects paper☆10Updated 7 years ago
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Updated 5 years ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆21Updated 4 years ago
- Learn and validate subtypes from multiple traits☆20Updated 4 years ago
- metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…☆20Updated 4 years ago
- R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data☆21Updated last month
- Code and data related to the meta-analysis of fat distribution in UK Biobank and GIANT☆20Updated 6 years ago
- BioC2020: Where Software and Biology Connect☆12Updated 2 years ago