dmitrykravchenko2018 / arithmetic_coding
Arithmetic Coding for Data Compression
☆16Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for arithmetic_coding
- Compression☆17Updated 4 years ago
- gsufsort: building suffix arrays, LCP-arrays and BWTs for string collections [AMB 2020]☆26Updated last year
- R-Index-F Library for Pattern Matching☆13Updated 3 months ago
- SneakySnake is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU arch…☆48Updated last year
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated 5 months ago
- Wavelet tree based on a fixed block boosting technique☆16Updated 3 years ago
- VBZ compression plugin for nanopore signal data☆39Updated 2 years ago
- Shouji is fast and accurate pre-alignment filter for banded sequence alignment calculation. Described in the Bioinformatics journal paper…☆16Updated 5 years ago
- Custom compression for CRAM and others.☆30Updated last week
- Testing various methods for choosing tANS entropy coding automata☆71Updated 11 months ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆13Updated 5 years ago
- Online construction of run-length BWT (RLBWT) and r-index. Plus, online LZ77 parsing based on RLBWT.☆14Updated 6 years ago
- Fastq compression☆17Updated 5 years ago
- micro-read Fast Alignment Search Tool☆19Updated 5 years ago
- Run-length compressed BWT with LZ77 sampled suffix array☆10Updated 2 years ago
- rans optimized tricks☆24Updated 6 years ago
- An optimal space run-length Burrows-Wheeler transform full-text index☆58Updated last year
- Header-only, gzread-like reader for gzip, bz2, and xz.☆12Updated 6 years ago
- public-domain implementation of entropy coder from ANS family.☆16Updated 5 years ago
- Bicriteria Data Compressor☆14Updated 6 years ago
- novel high throughput entropy encoder for BWT data☆13Updated 2 years ago
- LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.☆27Updated 2 years ago
- A CUDA implementation of Arithmetic Coding☆15Updated 5 years ago
- MEM mapper prototype☆13Updated 3 years ago
- The goal of the library is to help with research in the area of data compression. This is not meant to be fast or efficient implementatio…☆81Updated 11 months ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Updated 4 years ago
- LZ Double factor Factorization.☆11Updated 7 years ago
- ☆13Updated 4 years ago
- ☆16Updated 6 years ago
- Fast and Strong Burrows Wheeler Model☆19Updated 6 years ago