Code for the paper "Enzyme Promiscuity Prediction using hierarchy-informed multi-label classification"
☆13Aug 7, 2023Updated 3 years ago
Alternatives and similar repositories for EPP
Users that are interested in EPP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- code for "Fine-grained Entity Typing via Label Reasoning" EMNLP2021☆13May 27, 2022Updated 4 years ago
- ☆49Aug 8, 2022Updated 4 years ago
- EnzyHTP is a python library that automates the complete life-cycle of enzyme modeling☆38Aug 16, 2026Updated 2 months ago
- My pytorch implementation of the model described in the paper **Hierarchical Attention Networks for Document Classification** [paper](htt…☆10Mar 22, 2019Updated 7 years ago
- Metal Activity Heuristic of Metalloprotein and Enzymatic Sites (MAHOMES) - Predicts if a protein bound metal ion is enzymatic or non-enzy…☆11Apr 19, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A python tool for numerically encoding protein sequences based on PSSM profile☆11Jun 25, 2021Updated 5 years ago
- MGA☆44Jan 15, 2021Updated 5 years ago
- A model named ATMOL for predicting molecular property☆10May 2, 2022Updated 4 years ago
- Rapid and efficient image preprocessing pipeline for multiplexed spatial proteomics. Code to compare several techniques to denoise Imagin…☆10Aug 5, 2025Updated last year
- pains filter using rdktit☆11Mar 17, 2015Updated 11 years ago
- RXN for biochemical reactions☆77Oct 18, 2022Updated 4 years ago
- Official implementation of IJCAI'23 paper "MolHF: A Hierarchical Normalizing Flow for Molecular Graph Generation"☆15Aug 27, 2023Updated 3 years ago
- Bokeh extensions to plot molecules easily☆11Jul 14, 2025Updated last year
- Fast implementation of HMMSEARCH optimized for high-memory systems using PyHMMER☆12Jan 13, 2026Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Case Studies from the DeepMol Publication☆13Jan 23, 2025Updated last year
- EnzyDock: Protein–Ligand Docking of Multiple Reactive States along a Reaction Coordinate in Enzymes☆18Sep 5, 2024Updated 2 years ago
- A Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases.☆17Jul 9, 2024Updated 2 years ago
- A utility framework for the management of genome-scale metabolic models.☆11Mar 28, 2020Updated 6 years ago
- [AEPP 2022] Machine learning for food security: Principles for transparency and usability☆12Mar 9, 2021Updated 5 years ago
- code repo for Set2Gaussian☆17Jun 19, 2020Updated 6 years ago
- Base image providing dependencies for ASKCOS Docker images☆12Jun 14, 2024Updated 2 years ago
- ☆14Apr 9, 2024Updated 2 years ago
- ☆14May 21, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Food-Biomarker Ontology defines the relationships between foods and their associated metabolites (biomarkers) through a formal ontology☆19May 3, 2022Updated 4 years ago
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆18Jan 14, 2025Updated last year
- Prediction of metabolites formed by phase I and phase II xenobiotic metabolism.☆17May 25, 2022Updated 4 years ago
- This software package simulates the reduction of graphene oxide and calculates the optical response of the generated sp2 domains☆11Dec 22, 2016Updated 9 years ago
- An ambient noise detector☆11Aug 23, 2020Updated 6 years ago
- Generates consistent PSSM and/or PDB files for protein-protein complexes☆20Jun 26, 2022Updated 4 years ago
- A convolutional neural network predicts the toxicity of a drug based on its molecular structure.☆16Mar 27, 2019Updated 7 years ago
- Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023…☆23Aug 8, 2024Updated 2 years ago
- MRL-CQA for EMNLP 2020 submission. This work has been accepted by EMNLP 2020.☆19Oct 8, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆20Mar 31, 2021Updated 5 years ago
- Write code to study Algorithm Design☆10Aug 8, 2018Updated 8 years ago
- GraSeq: Graph and Sequence Fusion Learning for Molecular Property Prediction. In CIKM 2020.☆15Feb 10, 2021Updated 5 years ago
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆45Jun 28, 2021Updated 5 years ago
- Tool for quick offline batch conversion of Genbank IDs or accessions to taxonomy strings☆15Jan 8, 2024Updated 2 years ago
- Supporting information for predicting and engineering post-translational modifcations using Rosetta☆10Feb 13, 2024Updated 2 years ago
- The powerful crossword generator for Windows☆18Oct 15, 2026Updated 2 weeks ago