hybrid-kg / clep
π€ A Python Package for generating new patient representations driven by data and prior knowledge
β23Updated last month
Alternatives and similar repositories for clep:
Users that are interested in clep are comparing it to the libraries listed below
- Disease subnetwork detection with explainable Graph Neural Networksβ22Updated 8 months ago
- Code for the KDD 2021 paper 'Filtration Curves for Graph Representation'β18Updated last year
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Recordsβ24Updated 4 years ago
- Similarity search in heterogeneous knowledge graphs using meta paths.β24Updated last year
- Pacmed Labs experiments on uncertainty estimation, focusing on unbalanced tabular data and classification tasks.β21Updated 3 years ago
- SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseasesβ50Updated 5 months ago
- Bi-Level Graph Neural Networks for Drug-Drug Interaction Prediction. ICML 2020 Graph Representation Learning and Beyond (GRL+) Workshopβ29Updated 4 years ago
- π Results from the reproducibility and benchmarking studies presented in "Bringing Light Into the Dark: A Large-scale Evaluation of Knowβ¦β35Updated 2 years ago
- β18Updated last year
- Deep Graph Mapper: Seeing Graphs through the Neural Lensβ55Updated last year
- A Multimodal Transformer: Fusing Clinical Notes With Structured EHR Data for Interpretable In-Hospital Mortality Predictionβ29Updated 2 years ago
- β16Updated 3 years ago
- β14Updated 2 years ago
- Exploring the space of drug combinations to discover synergistic drugs using Active Learningβ23Updated 5 months ago
- β10Updated 4 years ago
- Contains public materials for students enrolled in MITx: 6.871x, Machine Learning for Healthcareβ20Updated 3 years ago
- A simple implementation of the paper "Disease Prediction via Graph Neural Networks".β20Updated 3 years ago
- Perform inference on algorithm-agnostic variable importance in Pythonβ20Updated 2 years ago
- β38Updated 2 years ago
- Ultrahyperbolic Representation Learningβ12Updated 4 years ago
- Code for paper "A deep learning framework for drug repurposing via emulating clinical trials on real world patient data" (Accepted to Natβ¦β95Updated 3 years ago
- Code to reproduce results in Ravindra NG* & Sehanobish A* et al. 2020, "Disease State Prediction From Single-Cell Data Using Graph Attentβ¦β16Updated 4 years ago
- MultiGraphGAN for predicting multiple target graphs from a source graph using geometric deep learning.β22Updated last year
- PlaNet: Predicting population response to drugs via clinical knowledge graphβ19Updated this week
- The first GANs-based omics-to-omics translation frameworkβ11Updated last year
- EmbedGEM: A framework to evaluate the utility of embeddings for genetic discoveryβ21Updated 3 months ago
- Deep direct likelihood knockoffsβ11Updated 3 years ago
- β15Updated 3 years ago
- Code to study the generalisability of benchmark models on non-stationary EHRs.β14Updated 5 years ago
- GraphFramEx: a systematic evaluation framework for explainability methods on GNNsβ43Updated 9 months ago