📊 Results from the reproducibility and benchmarking studies presented in "Bringing Light Into the Dark: A Large-scale Evaluation of Knowledge Graph Embedding Models Under a Unified Framework" (http://arxiv.org/abs/2006.13365)
☆36Apr 19, 2022Updated 4 years ago
Alternatives and similar repositories for benchmarking
Users that are interested in benchmarking are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 📖 A review of KGEM packages and frameworks at https://pykeen.github.io/kgem-software-review.☆12Jun 24, 2024Updated 2 years ago
- 📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures☆77Sep 23, 2026Updated 2 weeks ago
- Source code and data repository for "Ensembles of knowledge graph embedding models improve predictions for drug discovery"☆20Sep 9, 2026Updated last month
- 🤖 A Python library for learning and evaluating knowledge graph embeddings☆2,044Updated this week
- 🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)☆139Jul 2, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence…☆34Jan 8, 2026Updated 9 months ago
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆22Nov 3, 2021Updated 4 years ago
- EMNLP 2020: Message Passing for Hyper-Relational Knowledge Graphs☆90Dec 1, 2023Updated 2 years ago
- "Inductive Entity Representations from Text via Link Prediction" @ The Web Conference 2021☆64Jun 12, 2023Updated 3 years ago
- This repository contains code and dataset splits for the paper "Classification by Attention: Scene Graph Classification with Prior Knowle…☆16May 27, 2022Updated 4 years ago
- Knowledge Graph Embeddings learned from the structure and literals of knowledge graphs☆44Jun 21, 2022Updated 4 years ago
- 🔍 Lookup classes and instantiate them with style☆68Sep 29, 2026Updated last week
- Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in B…☆19Feb 11, 2026Updated 8 months ago
- Provides web credibility models (Likert scale) to assign a trustworthiness score to a given website.☆11Sep 19, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- PyG re-implementation of Neural Bellman-Ford Networks (NeurIPS 2021)☆77Aug 25, 2022Updated 4 years ago
- ☆16Oct 5, 2026Updated last week
- ☆11Oct 18, 2016Updated 9 years ago
- The Gene Ontology Helpdesk☆16Mar 25, 2026Updated 6 months ago
- Efficient, Simple, and Automated Negative Sampling for Knowledge Graph Embedding. VLDBJ 2020.☆12Nov 9, 2020Updated 5 years ago
- semi supervised node classification on neo4j database☆23Aug 11, 2022Updated 4 years ago
- ☆13Apr 23, 2025Updated last year
- Simple yet SoTA Knowledge Graph Embeddings.☆112Jun 6, 2022Updated 4 years ago
- Y. Zhang, Q. Yao, J. Kwok. Bilinear Scoring Function Search for Knowledge Graph Learning. TPAMI 2022☆68Dec 1, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Widgets for browsing spatial data in SPARQL endpoints☆18Apr 17, 2014Updated 12 years ago
- 📮 An integrative registry of biological databases, ontologies, and nomenclatures.☆152Updated this week
- Vaccine Ontology☆18Jun 12, 2026Updated 4 months ago
- OHDSI Ananke - A Tool for Mapping Between OHDSI Concept Identifiers to Unified Medical Language System (UMLS) identifiers☆18Sep 28, 2020Updated 6 years ago
- Comprises the whole SANSA stack☆15Oct 8, 2020Updated 6 years ago
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 3 years ago
- OpenBioLink is a resource and evaluation framework for evaluating link prediction models on heterogeneous biomedical graph data.☆164May 3, 2024Updated 2 years ago
- A Benchmark for Machine Learning from Structured Data☆23Nov 2, 2021Updated 4 years ago
- A tiny library for larger graphs☆120Oct 1, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Using pretrained language models for biomedical knowledge graph completion.☆47Oct 7, 2021Updated 5 years ago
- 🤖 A Python Package for generating new patient representations driven by data and prior knowledge☆22Oct 24, 2025Updated 11 months ago
- Locally corrected Nyström (LCN), as proposed in "Scalable Optimal Transport in High Dimensions for Graph Distances, Embedding Alignment, …☆19Apr 26, 2023Updated 3 years ago
- Testing of Neural Topic Modeling for Japanese articles☆13Jul 24, 2019Updated 7 years ago
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 3 years ago
- ☆15Feb 7, 2020Updated 6 years ago
- KGTuner: Efficient Hyper-parameter Search for Knowledge Graph Learning" (ACL 2022 long paper)☆19May 23, 2022Updated 4 years ago