chop-dbhi / drug_word_embeddings
development and intrinsic evaluation of drug related word embeddings using PubMed abstracts and DrugBank
β14Updated 8 years ago
Alternatives and similar repositories for drug_word_embeddings
Users that are interested in drug_word_embeddings are comparing it to the libraries listed below
Sorting:
- Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)β135Updated 9 months ago
- Extracting biomedical relationships from literature with Snorkel πβ58Updated 4 years ago
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)β19Updated last year
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work β¦β102Updated 4 years ago
- Retrieve and process PubTator annotationsβ44Updated last year
- Crowdsourced ground truth for medical relation extraction.β69Updated 6 years ago
- Predicting adverse drug reactions from a knowledge graphβ27Updated 4 years ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://giβ¦β45Updated 2 years ago
- CollaboNet for Biomedical Named Entity Recognitionβ48Updated 6 years ago
- This repository contains supplementary data, and links to the model and corpora used for the paper: Transfer learning for biomedical nameβ¦β37Updated 6 years ago
- Named Entity Recognition for biomedical entitiesβ47Updated 2 years ago
- Table compiling the list of biomedically-related corpora available for named entity recognition (and some also suitable for association dβ¦β18Updated 7 years ago
- Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)β33Updated 6 years ago
- β12Updated 4 years ago
- Turning Ontologies Plus Annotation Properties into Vectorsβ35Updated 4 years ago
- Python library for work with BioCreative filesβ13Updated 7 years ago
- β32Updated last year
- NLP framework in python for entity recognition and relationship extractionβ115Updated 2 years ago
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towaβ¦β15Updated 5 years ago
- BioELMo is a biomedical version of embeddings from language model (ELMo), pre-trained on PubMed abstracts.β33Updated 5 years ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO frameworkβ45Updated 4 years ago
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bioβ¦β36Updated 6 years ago
- Clinical Concept Extraction with Contextual Word Embeddingβ40Updated 4 years ago
- Tools for working with the S800 corpusβ11Updated 4 years ago
- β41Updated 5 years ago
- Medical Relations and Entities Extractionβ36Updated 2 years ago
- migrates from swat-4-med-safety/SW-DDI-catalog/drug-drug-interactionsβ35Updated 7 years ago
- Code for AttentionMeSHβ17Updated 6 years ago
- β122Updated 7 years ago
- Turku Event Extraction Systemβ146Updated 6 years ago