Alternatives and similar repositories for TCGAD

Users that are interested in TCGAD are comparing it to the libraries listed below

• SBU-BMI / u24_lymphocyte
  ☆32Updated 5 years ago
• mdozmorov / TCGAsurvival
  Scripts to analyze TCGA data
  ☆128Updated last year
• cpreid2 / gdc-rnaseq-tool
  Tool to download/merge RNASeq data from the GDC Portal in matrices identified by TCGA barcode
  ☆36Updated 5 years ago
• cclab-brca / neoadjuvant-therapy-response-predictor
  ☆56Updated 3 years ago
• Zaoqu-Liu / MOFS
  Multimodality Fusion Subtyping (Nature Communications)
  ☆30Updated 9 months ago
• acsbal / Automated-TIL-scoring-QuPath-Classifier-for-Melanoma
  QuPath TIL classifier for Melanoma on HE slides
  ☆10Updated 6 years ago
• jmzeng1314 / rnaseq_tutorial
  Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…
  ☆16Updated 6 years ago
• ruitian-olivia / IGI-DL
  Code for ST_IGI package
  ☆34Updated 6 months ago
• dnanexus / OpenBio
  ☆101Updated 2 weeks ago
• huangzhii / SALMON
  SALMON: Survival Analysis Learning with Multi-Omics Neural Networks
  ☆66Updated last year
• NCI-GDC / gdc-client
  GDC Data Transfer Tool
  ☆155Updated 7 months ago
• kmboehm / onco-fusion
  ☆35Updated 3 years ago
• icbi-lab / IHCount
  IHC-image analysis workflow
  ☆23Updated 7 years ago
• SBU-BMI / quip_distro
  ☆32Updated last year
• fsct135 / DCAP
  DCAP:Integrating multi-omics data with deep learning for predicting cancer prognosis
  ☆21Updated 5 years ago
• xinzhen-lab / OC-prediction
  ☆10Updated 2 years ago
• millett / pathology_learning
  Using traditional machine learning and deep learning methods to predict stuff from TCGA pathology slides.
  ☆18Updated 7 years ago
• CharlieCheckpt / pacpaint
  ☆13Updated 2 years ago
• drmaxchen-gbc / HCC-deep-learning
  HCC_Deep_learning
  ☆19Updated 5 years ago
• jmzeng1314 / tcga_example
  ☆294Updated 6 years ago
• l-magnificence / Mime
  Machine learning-based integration model with elegant performance
  ☆183Updated 4 months ago
• dnanexus / UKB_RAP
  Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DN…
  ☆227Updated last year
• miargentieri / proteomic-age-ukb
  ☆51Updated 6 months ago
• gerstung-lab / PC-CHiP
  Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis
  ☆77Updated 5 years ago
• compgenome365 / TCGA-Assembler-2
  TCGA-Assembler 2
  ☆77Updated 7 years ago
• qalid7 / compath
  deep learning pipeline repository for the paper "Geospatial immune variability illuminates differential evolution of lung adenocarcinoma…
  ☆52Updated 5 years ago
• msk-mind / luna
  Scripts for data processing
  ☆50Updated last year
• genomics-dev / ukb-pret
  ☆33Updated last year
• Cassie07 / Review_Molecular_profile_prediction_GNN
  [The Lancet Digital Health, MICCAI2020 Oral] The official code of "Spatially-aware Graph Neural Networks and Cross-level Molecular Profil…
  ☆23Updated 2 years ago
• jnkather / DeepHistology
  A pan-cancer platform for mutation prediction from routine histology
  ☆69Updated 4 years ago