chenwi / TCGADLinks
TCGA data downloader
☆15Updated 6 years ago
Alternatives and similar repositories for TCGAD
Users that are interested in TCGAD are comparing it to the libraries listed below
Sorting:
- ☆31Updated 4 years ago
- ☆30Updated 2 years ago
- Code for ST_IGI package☆30Updated last month
- HCC_Deep_learning☆19Updated 5 years ago
- ☆34Updated 6 months ago
- deep learning pipeline repository for the paper "Geospatial immune variability illuminates differential evolution of lung adenocarcinoma…☆52Updated 5 years ago
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆77Updated 4 years ago
- Scripts to analyze TCGA data☆122Updated last year
- A pan-cancer platform for mutation prediction from routine histology☆69Updated 4 years ago
- ☆55Updated 2 years ago
- IHC-image analysis workflow☆23Updated 7 years ago
- DCAP:Integrating multi-omics data with deep learning for predicting cancer prognosis☆21Updated 4 years ago
- Tool to download/merge RNASeq data from the GDC Portal in matrices identified by TCGA barcode☆35Updated 5 years ago
- Deep-Learning framework for multi-omic and survival data integration☆83Updated last year
- Multimodality Fusion Subtyping (Nature Communications)☆26Updated 4 months ago
- SALMON: Survival Analysis Learning with Multi-Omics Neural Networks☆68Updated 10 months ago
- GDC Data Transfer Tool☆151Updated 2 months ago
- Train a model to predict gene expression from histology slides.☆106Updated 3 years ago
- Scripts for data processing☆45Updated last year
- ☆32Updated last year
- ☆13Updated 2 years ago
- A pixel classification based multiplexed image segmentation pipeline☆100Updated last year
- [The Lancet Digital Health, MICCAI2020 Oral] The official code of "Spatially-aware Graph Neural Networks and Cross-level Molecular Profil…☆24Updated last year
- sc-MTOP is an analysis framework based on deep learning and computational pathology. This framework aims to characterize the tumor ecosys…☆38Updated 3 months ago
- Using traditional machine learning and deep learning methods to predict stuff from TCGA pathology slides.☆18Updated 6 years ago
- the process of operating data types in the TCGA database☆19Updated 4 years ago
- Spatial profiling toolbox for spatial characterization of tissue microenvironment (https://oncopathtk.org)☆22Updated last week
- Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images☆21Updated 3 months ago
- QuPath extension to run StarDist nucleus detection☆45Updated 2 months ago
- ☆33Updated 4 years ago