Alternatives and similar repositories for gztool:

Users that are interested in gztool are comparing it to the libraries listed below

• Piezoid / pugz
  Truly parallel gzip decompression
  ☆125Updated 5 years ago
• mlin / GenomicSQLite
  Genomics Extension for SQLite
  ☆161Updated 6 months ago
• mxmlnkn / indexed_bzip2
  Fast parallel random access to bzip2 and gzip files in Python
  ☆77Updated last month
• pycompression / xopen
  Open compressed files in Python
  ☆72Updated last month
• tycho-kirchner / shournal
  Log shell-commands and used files. Snapshot executed scripts. Fully automatic.
  ☆194Updated 2 weeks ago
• kjn / lbzip2
  Parallel bzip2 utility
  ☆141Updated 2 years ago
• jhclark / memusg
  A 'time'-like utility for Unix that measures peak memory usage
  ☆66Updated 12 years ago
• pyranges / ncls
  The Nested Containment List for Python. Basically a static interval-tree that is silly fast for both construction and lookups.
  ☆219Updated 6 months ago
• codechenx / tv
  tv(table viewer) for delimited text file(csv,tsv,etc) in terminal.
  ☆43Updated 4 years ago
• bingmann / cobs
  COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
  ☆84Updated last year
• nh13 / pbgzip
  Parallel Block GZIP
  ☆50Updated 8 years ago
• bihealth / vcfpy
  Python 3 library with good support for both reading and writing VCF
  ☆107Updated 9 months ago
• agordon / datamash
  mirror of GNU Datamash. Send questions/comments/bugs to bug-datamash@gnu.org
  ☆75Updated last week
• alexpreynolds / sample
  Performs memory-efficient reservoir sampling on very large input files delimited by newlines
  ☆69Updated 5 years ago
• dnbaker / bonsai
  Bonsai: Fast, flexible taxonomic analysis and classification
  ☆70Updated 11 months ago
• martian-lang / martian
  Language and framework for high performance computational pipelines.
  ☆148Updated last month
• dnbaker / sketch
  C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings
  ☆152Updated 8 months ago
• lh3 / biofast
  Benchmarking programming languages/implementations for common tasks in Bioinformatics
  ☆182Updated 3 years ago
• ga4gh / htsget-refserver
  Reference server implementation for the GA4GH HTSget API standard.
  ☆12Updated last year
• gsauthof / cgmemtime
  cgmemtime measures the high-water RSS+CACHE memory usage of a process and its descendant processes.
  ☆113Updated 2 years ago
• biogo / hts
  biogo high throughput sequencing repository
  ☆126Updated 11 months ago
• shenwei356 / brename
  A practical cross-platform command-line tool for safely batch renaming files/directories via regular expression
  ☆268Updated 4 months ago
• dnbaker / dashing
  Fast and accurate genomic distances using HyperLogLog
  ☆160Updated 2 years ago
• mlin / iitii
  Implicit Interval Tree with Interpolation Index
  ☆41Updated 2 years ago
• kylessmith / ailist
  Augmented Interval Tree implemented in Cython/C
  ☆19Updated 2 months ago
• brentp / gargs
  better(?) xargs in go
  ☆144Updated 7 years ago
• dnanexus / dxfuse
  FUSE filesystem for the DNAnexus storage system
  ☆14Updated last week
• splatlab / mantis
  Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index
  ☆81Updated last year
• arq5x / bits
  BITS: Binary Interval Search
  ☆25Updated 7 years ago
• varfish-org / hgvs-rs
  A port of biocommons/hgvs to the Rust programming language
  ☆13Updated this week