choosehappy / Snippets
Pieces of code likely to be useful as part of larger projects
☆20Updated 2 years ago
Alternatives and similar repositories for Snippets:
Users that are interested in Snippets are comparing it to the libraries listed below
- SlideRunner is a tool for massive cell annotations in whole slide images☆77Updated last year
- The official deployment of the Digital Slide Archive and HistomicsTK.☆119Updated this week
- An open-source digital pathology based rapid image annotation tool☆76Updated 2 weeks ago
- A High-Throughput Workflow for Preprocessing, Deep Learning Analytics and Interpretation in Digital Pathology☆40Updated 2 years ago
- A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.☆78Updated 2 years ago
- Delete the label from a whole-slide image☆64Updated 4 years ago
- Coincides with blogpost for using geojson and shapely☆31Updated 4 years ago
- A human in the loop solution to machine learning for pathologists (easy semantic segmentation of WSI)☆51Updated 4 years ago
- Whole Slide Digital Pathology Image Tissue Localization☆44Updated last year
- A Girder plugin for pathology image annotations and analysis.☆70Updated last week
- HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings…☆29Updated 3 years ago
- ☆23Updated last year
- Survival Convolutional Neural Networks☆68Updated 2 years ago
- A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues☆31Updated 2 months ago
- Interactive Segmentation of Nucleus☆63Updated 2 years ago
- 🔬 Code-free deep segmentation for computational pathology☆53Updated 10 months ago
- An implementation of Unet for pytorch designed for digital pathology segmentation☆123Updated 2 years ago
- A tool for training machine-learning models with whole-slide imaging datasets☆24Updated last year
- Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch samplin…☆161Updated 9 months ago
- a toolbox for manipulation of digital pathology slides and annotations☆19Updated 4 years ago
- A workflow for redacting PHI from whole slide images (WSI) based on the Digital Slide Archive.☆16Updated 2 weeks ago
- List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images☆25Updated 2 years ago
- ☆26Updated 2 years ago
- Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021☆21Updated 3 years ago
- Full package for applying deep learning to virtual slides.☆68Updated 6 years ago
- ☆21Updated last month
- PAthological QUpath Obsession - QuPath and Python conversations☆115Updated 4 months ago
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…☆30Updated 3 years ago
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆71Updated 3 months ago
- This repository contains adaptations of the state-of-the-art deep learning based object detection models for the detection of cell nuclei…☆27Updated 2 years ago