Data Processing and Visualization for Metagenomics
☆17Oct 31, 2024Updated 2 years ago
Alternatives and similar repositories for metagenomics-analysis
Users that are interested in metagenomics-analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pangenome Analysis in Prokaryotes Lesson☆13Aug 20, 2024Updated 2 years ago
- ☆10Aug 10, 2023Updated 3 years ago
- Python3 wrapper for parallelized gene prediction using Prodigal☆11Mar 3, 2023Updated 3 years ago
- Conversion software tool for producing both annotation and tree files for GraPhlAn☆11Feb 2, 2022Updated 4 years ago
- Snakemake pipeline for 16S, 18S and ITS metagenomics using qiime2☆18Jan 20, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- An R package for plotting GWAS results from the GAPIT package☆14Oct 31, 2026Updated last week
- Good Enough Practices in Scientific Computing☆26Updated this week
- Instructions and helpful R code for Running GEMMA and GAPIT☆13Sep 14, 2017Updated 9 years ago
- Easily download genomes and build BLAST/Bowtie indexes in Python☆24Sep 30, 2022Updated 4 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆42Feb 27, 2024Updated 2 years ago
- An R-package to visualise edibble designs as ggplot graphics☆12Dec 12, 2023Updated 2 years ago
- R tools for reconstructing metabolisms.☆18May 13, 2026Updated 5 months ago
- Parallel Programming in Python☆13Updated this week
- Analysis of (gut) microbiome in Qiime2 and R.☆26Aug 23, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Automated pipeline for whole bacterial genome analysis based on snakemake☆12May 16, 2022Updated 4 years ago
- Snakemake workflow to perform machine learning classification of microbiome sequence data☆10Nov 16, 2024Updated last year
- Workflow for qiime2 workshop☆17Apr 17, 2024Updated 2 years ago
- A linear decomposition model for testing microbiome association and mediation☆14Sep 7, 2023Updated 3 years ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆15Nov 24, 2025Updated 11 months ago
- A collection of snakemake scripts to streamline genome annotation☆14Mar 24, 2026Updated 7 months ago
- Person name matching tools☆14Aug 31, 2017Updated 9 years ago
- Workshop on Graphical User Interfaces for Research Software☆17Jul 27, 2022Updated 4 years ago
- Agent skills for building and running Nextflow pipelines.☆25Oct 29, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- The dream setup: marimo inside Grist !☆12Jan 29, 2026Updated 9 months ago
- A spatially explicit trait- and individual-based microbial systems modelling framework☆15Oct 28, 2026Updated last week
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- An attempt at proxying vscode remote shell backend through cluster login nodes.☆20Feb 5, 2026Updated 9 months ago
- Mitochondrial Genome Assembly☆17Feb 21, 2024Updated 2 years ago
- Nessie Web UI☆12Updated this week
- (Meta-)genome screening for functional and natural product gene sequences☆119Updated this week
- A pan-cancer analysis of the microbiome in metastatic cancer (Battaglia et. al, Cell, 2024)☆17Apr 9, 2024Updated 2 years ago
- MUSET. Set of utilities for the construction of abundance unitig matrices from sequencing data☆11Jun 1, 2026Updated 5 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Find housekeeping genes in prokaryotic (meta)genomic data☆11Feb 19, 2026Updated 8 months ago
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 3 years ago
- ☆12May 19, 2026Updated 5 months ago
- Continual Learning: A Systematic Literature Review☆21Nov 13, 2025Updated 11 months ago
- Text Analysis with Python☆13Updated this week
- CLI tool to annotate genes with KOfam☆108Oct 17, 2026Updated 3 weeks ago
- Taxonomy manipulation for sylph (new version)☆12Sep 18, 2026Updated last month