Alternatives and similar repositories for metagenomics-analysis:

Users that are interested in metagenomics-analysis are comparing it to the libraries listed below

• vmikk / metagMisc
  Miscellaneous functions for metagenomic analysis.
  ☆50Updated last month
• mblstamps / stamps2019
  Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA
  ☆35Updated 5 years ago
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆83Updated last week
• mikeblazanin / gcplyr
  gcplyr is an R package that facilitates wrangling and analysis of microbial growth curve data
  ☆32Updated 2 months ago
• mirnavazquez / RbiMs
  R tools for reconstructing metabolisms.
  ☆14Updated 2 weeks ago
• bacteria-archaea-traits / bacteria-archaea-traits
  A synthesis of bacterial and archaeal phenotypic trait data
  ☆34Updated last year
• adw96 / breakaway
  Species richness with high diversity
  ☆68Updated last week
• spholmes / F1000_workflow
  ☆43Updated 7 years ago
• sprouffske / growthcurver
  Growthcurver is an R package that fits growth curve data to a standard form of the logistic equation common in ecology and evolution whos…
  ☆46Updated 3 years ago
• schuyler-smith / phylosmith
  functions for analyzing phyloseq data
  ☆27Updated 2 months ago
• zoecastillo / microbiomeExplorer
  The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…
  ☆70Updated 2 years ago
• statdivlab / corncob
  Count Regression for Correlated Observations with the Beta-binomial
  ☆106Updated last month
• statdivlab / radEmu
  ☆54Updated 3 weeks ago
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆23Updated 2 years ago
• biocore / gemelli
  Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…
  ☆81Updated 6 months ago
• spxuw / DKI
  ☆36Updated last month
• FrederickHuangLin / ANCOMBC
  Differential abundance (DA) and correlation analyses for microbial absolute abundance data
  ☆121Updated last month
• pmartinezarbizu / pairwiseAdonis
  Pairwise multilevel comparison using adonis
  ☆75Updated last year
• david-barnett / microViz
  R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
  ☆114Updated last week
• mikemc / speedyseq
  Speedy versions of phyloseq functions
  ☆48Updated last year
• BradyAJohnston / plasmapR
  Creating plasmid maps inside ggplot.
  ☆86Updated 4 months ago
• grunwaldlab / metacoder
  Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
  ☆140Updated 2 months ago
• sherrillmix / taxonomizr
  Parse NCBI taxonomy and accessions to find taxonomic assignments
  ☆74Updated last month
• yijuanhu / LDM-Archive
  Linear Decomposition Model
  ☆24Updated last year
• emmanuelparadis / ape
  Analysis of Phylogenetics and Evolution
  ☆65Updated 2 weeks ago
• ukaraoz / microtrait
  ☆37Updated last year
• mahendra-mariadassou / phyloseq-extended
  Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…
  ☆33Updated last month
• arendsee / rhmmer
  Simple R utilities for working with HMMER
  ☆18Updated 6 months ago
• leffj / mctoolsr
  Microbial community analysis tools in R
  ☆21Updated 2 years ago
• pbuttigieg / masame
  Code to run the shiny functions for the MASAME suite
  ☆28Updated 5 years ago