jhbadger / nimbioseqLinks
Nim Library for sequence (protein/nucleotide) bioinformatics
☆22Updated 4 years ago
Alternatives and similar repositories for nimbioseq
Users that are interested in nimbioseq are comparing it to the libraries listed below
Sorting:
- command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig☆16Updated 5 years ago
- fast easy interval overlapping for nim-lang☆28Updated last week
- useful command-line tools written to showcase hts-nim☆49Updated 4 years ago
- DNA kmer operations for nim☆14Updated 3 years ago
- nim wrapper for htslib for parsing genomics data files☆156Updated 10 months ago
- use the noise☆15Updated 5 years ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆32Updated 5 years ago
- A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser☆15Updated last year
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Updated 4 years ago
- Annotate non-coding regulatory vars using our GREEN-DB, prediction scores, conservation and pop AF☆18Updated 2 weeks ago
- horizontal pileup☆16Updated 2 years ago
- A collection of CSV/TSV Utilities☆12Updated 5 years ago
- Detect novel (and reference) STR expansions from short-read data☆67Updated last year
- Bloom filter implementation in Nimrod☆16Updated 2 years ago
- A string library☆81Updated 2 years ago
- ☆14Updated 4 years ago
- LoFreq Version 3☆27Updated 4 years ago
- ziglang + htslib☆20Updated 3 years ago
- Variant Alert!, a framework to monitor every significant alteration in variant classification and gene-disease association between two ve…☆14Updated 3 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated last week
- BitVector Implementation in Nim☆17Updated 3 years ago
- This module contains basic procs for creating temporary files and directories☆21Updated 3 years ago
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆63Updated this week
- A wrapper for the cMPFIT library for the Nim programming language, https://vindaar.github.io/nim-mpfit/☆18Updated 3 months ago
- Bam Read Index - Extract alignments from a bam file by readname☆26Updated last year
- PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)☆14Updated 7 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Readability enhancement tool for bioinformatics data file format☆30Updated 5 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago