jhbadger / nimbioseq
Nim Library for sequence (protein/nucleotide) bioinformatics
☆22Updated 4 years ago
Alternatives and similar repositories for nimbioseq:
Users that are interested in nimbioseq are comparing it to the libraries listed below
- command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig☆16Updated 4 years ago
- DNA kmer operations for nim☆14Updated 2 years ago
- useful command-line tools written to showcase hts-nim☆49Updated 4 years ago
- use the noise☆15Updated 4 years ago
- fast easy interval overlapping for nim-lang☆27Updated 3 years ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆32Updated 4 years ago
- A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser☆15Updated last year
- nim wrapper for htslib for parsing genomics data files☆155Updated 5 months ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆50Updated 3 years ago
- ☆14Updated 4 years ago
- horizontal pileup☆16Updated 2 years ago
- A collection of CSV/TSV Utilities☆12Updated 4 years ago
- Annotate non-coding regulatory vars using our GREEN-DB, prediction scores, conservation and pop AF☆18Updated 5 months ago
- Detect novel (and reference) STR expansions from short-read data☆63Updated last year
- Bloom filter implementation in Nimrod☆15Updated last year
- Variant Alert!, a framework to monitor every significant alteration in variant classification and gene-disease association between two ve…☆14Updated 3 years ago
- A string library☆78Updated 2 years ago
- ziglang + htslib☆20Updated 3 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆24Updated 9 months ago
- Index and query k-mer matrices in BGZF☆12Updated 6 years ago
- Generate an enhanced VCF files from ClinVar XML Full releases☆13Updated last year
- drunk on perbase pileups and lua expressions☆17Updated last year
- LoFreq Version 3☆27Updated 3 years ago
- Viroid-like circRNA discovery and analysis suite☆15Updated last year
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- Small general purpose library for C and Python with focus on bioinformatics.☆29Updated 2 years ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆17Updated this week
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆43Updated 2 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago