Courses & workshops led by members of the Krishnan Lab.
☆23Sep 7, 2025Updated 5 months ago
Alternatives and similar repositories for teaching
Users that are interested in teaching are comparing it to the libraries listed below
Sorting:
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Nov 3, 2021Updated 4 years ago
- In-depth analysis of normalization and transformation methods for building coexpression networks from RNA-seq data.☆15Aug 4, 2023Updated 2 years ago
- reverse gene expression score☆15Sep 8, 2023Updated 2 years ago
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20Jan 20, 2026Updated last month
- ☆11Mar 1, 2025Updated last year
- Workshop: RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR☆13Aug 23, 2021Updated 4 years ago
- RCSM(Recommended Connectivity-map Scoring Methods)☆17Aug 2, 2019Updated 6 years ago
- An automated pipe for reproducible RNA-seq analysis with the minimal efforts from researchers. You only need to provide the taxa name and…☆14Mar 4, 2022Updated 3 years ago
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Dec 27, 2025Updated 2 months ago
- A QIIME 2 implementation of SMURF☆13Apr 27, 2022Updated 3 years ago
- VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…☆17Jan 28, 2024Updated 2 years ago
- A Python toolkit for setting up benchmarking dataset using biomedical networks☆22Updated this week
- ☆20Nov 30, 2023Updated 2 years ago
- Connect the dots in networks.☆20Aug 28, 2020Updated 5 years ago
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆27Aug 21, 2024Updated last year
- ☆11Jul 3, 2022Updated 3 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Oct 9, 2020Updated 5 years ago
- Comparison of dimensionality reduction methods☆30Mar 24, 2020Updated 5 years ago
- ☆32Jan 4, 2025Updated last year
- Benchmarking long-read RNA-seq analysis tools☆27Feb 17, 2025Updated last year
- Workflows used for processing whole genome sequence data + germline variant calling. This Repository has been archived, please visit the …☆28Jan 4, 2021Updated 5 years ago
- Code for paired TCR data analysis from TIRTL-seq experiments☆10Nov 24, 2025Updated 3 months ago
- Mediated Expression Score Regression (MESC)☆27Nov 4, 2025Updated 3 months ago
- Generate robust DNA barcode sets☆33Feb 6, 2024Updated 2 years ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆35Feb 14, 2023Updated 3 years ago
- Computational Analysis of Novel Drug Opportunities☆40Jan 9, 2026Updated last month
- mesa package for Methylation Enrichment Sequencing Analysis☆15Nov 20, 2025Updated 3 months ago
- Cell Heterogeneity Accounted cLonal Methylation (CHALM)☆10Jul 6, 2021Updated 4 years ago
- ☆10May 31, 2022Updated 3 years ago
- A single-cell transcriptomic analysis of endometriosis, endometriomas, eutopic endometrial samples and uninvolved ovary tissues highlight…☆18Jan 12, 2023Updated 3 years ago
- KDS software for Kinase Drug Selectivity☆11Jun 8, 2023Updated 2 years ago
- ☆10Aug 29, 2023Updated 2 years ago
- BESST - scaffolder for genomic assemblies☆58Jul 6, 2023Updated 2 years ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated last year
- ☆10Dec 17, 2019Updated 6 years ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 2 years ago
- Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C…☆11May 28, 2021Updated 4 years ago