gijswobben / pymed
PyMed is a Python library that provides access to PubMed.
☆203Updated 3 years ago
Alternatives and similar repositories for pymed:
Users that are interested in pymed are comparing it to the libraries listed below
- Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.☆106Updated last month
- A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset☆619Updated last month
- Batch download articles based on PMID (Pubmed ID)☆117Updated last year
- Automatic synthesis of RCTs☆145Updated 2 years ago
- A Python package to download full article PDFs from OA publications☆40Updated last month
- Lookup PubMed records and make Publication objects with info about a scientific publication☆41Updated 2 years ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆64Updated 6 months ago
- Web scraping PubMed database and paper information visualization☆40Updated 7 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆317Updated 3 years ago
- ☆212Updated 2 months ago
- Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-the…☆108Updated 3 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆176Updated 2 years ago
- Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on …☆73Updated last year
- Recognize bio-medical entities from a text corpus☆119Updated last year
- ☆146Updated last year
- Tools to scrape publication metadata from pubmed, arxiv, medrxiv, biorxiv and chemrxiv.☆305Updated last week
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆45Updated 4 years ago
- Machine-learning based pipeline relying on LambdaMART currently used in PubMed for relevance (Best Match) searches☆40Updated 6 years ago
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆179Updated 10 months ago
- ☆64Updated 3 years ago
- Simple python parser for MEDLINE, Pubmed OA affiliation string☆37Updated 3 years ago
- Tools to download datafiles from the Cochrane Library of Systematic Reviews☆13Updated 4 years ago
- Python wraper for MetaMap☆170Updated 4 years ago
- all scripts used in gatortron project☆114Updated last year
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆180Updated 9 months ago
- Python package that wraps around the ClinicalTrials.gov API☆51Updated 9 months ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆86Updated last year
- AIONER☆49Updated 6 months ago
- A Serverless Text Annotation Tool for Corpus Development☆56Updated this week
- BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences☆583Updated last year