PyMed is a Python library that provides access to PubMed.
☆215Dec 7, 2021Updated 4 years ago
Alternatives and similar repositories for pymed
Users that are interested in pymed are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Lookup PubMed records and make Publication objects with info about a scientific publication☆41Nov 23, 2022Updated 3 years ago
- PubMed analysis: code and data☆97Apr 4, 2022Updated 4 years ago
- Tools for text processing of structured product labels☆12Mar 27, 2020Updated 6 years ago
- Machine learning RCT classifier☆23Mar 25, 2023Updated 3 years ago
- Python package for access to online biomedical resources, usually via REST APIs.☆19Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences☆614Aug 15, 2023Updated 2 years ago
- a Python 3 command-line tool to maintain a DB mirror of MEDLINE (https://pypi.python.org/pypi/medic) - ALERT: As I have moved out of scie…☆25Sep 28, 2015Updated 10 years ago
- Tools to scrape publications & their metadata from pubmed, arxiv, medrxiv, biorxiv and chemrxiv.☆515Mar 17, 2026Updated last month
- Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.☆152Apr 21, 2026Updated last week
- A framework for keeping biomedical text mining result up-to-date☆42Jul 11, 2020Updated 5 years ago
- Framework for running text mining tools on latest publications. Main page at:☆15Jul 13, 2022Updated 3 years ago
- Python library and CLI for submitting jobs to JPred - A Protein Secondary Structure Prediction Server☆10Sep 23, 2018Updated 7 years ago
- Create and Query a Local Copy of GenBank in R☆27Mar 6, 2025Updated last year
- Curated list of resources about Data for Good, Data Science for Good, Data Science for Social Good, Data Science for Public Good, Data fo…☆14Apr 25, 2026Updated last week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Multifactorial modeling of response to checkpoint inhibitor immunotherapy from tumor, immune, and clinical features☆17Jun 29, 2018Updated 7 years ago
- ☆14Aug 3, 2024Updated last year
- Expert annotated Hallmarks of Cancer Corpus☆21Sep 18, 2018Updated 7 years ago
- A dashboard to explore, monitor and learn about OpenFDA data.☆10Apr 19, 2016Updated 10 years ago
- A Python package to download full article PDFs from OA publications☆54Jan 12, 2025Updated last year
- Person name matching tools☆13Aug 31, 2017Updated 8 years ago
- ☆21Dec 15, 2023Updated 2 years ago
- PubMed PICO Element Detection Dataset☆57Jul 19, 2018Updated 7 years ago
- mapped with CPT and ICD codes☆16Dec 7, 2015Updated 10 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ASAP-SML: An Antibody Sequence Analysis Pipeline Using Statistical Testing and Machine Learning☆11Jul 6, 2023Updated 2 years ago
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 7 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆176Apr 18, 2022Updated 4 years ago
- Three complex span tasks to use in a browser☆14Aug 3, 2020Updated 5 years ago
- Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on …☆81Nov 2, 2023Updated 2 years ago
- ☆55Apr 9, 2020Updated 6 years ago
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆36Jul 10, 2024Updated last year
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆51Jan 11, 2024Updated 2 years ago
- Automatically fetch PDFs from terminal using a pubmed ID or search term (pubmed style)☆23Oct 3, 2009Updated 16 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Study done with the dataset of the Parkinson’s Disease Digital Biomarker DREAM Challenge☆11Jan 9, 2018Updated 8 years ago
- libChEBIpy: a Python API for accessing the ChEBI database☆25Aug 26, 2025Updated 8 months ago
- A Python wrapper for exposing Linked Open Data from public SPARQL-served endpoints☆17Sep 3, 2018Updated 7 years ago
- web-based citation screening tool☆44Apr 22, 2021Updated 5 years ago
- A tool for retrieving articles from PubMed. Can work as a standalone application or in conjunction with the author disambiguation applica…☆15Mar 9, 2026Updated last month
- ☆13Dec 5, 2024Updated last year
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆201May 3, 2024Updated last year