gijswobben / pymedLinks
PyMed is a Python library that provides access to PubMed.
☆212Updated 3 years ago
Alternatives and similar repositories for pymed
Users that are interested in pymed are comparing it to the libraries listed below
Sorting:
- Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.☆132Updated 2 months ago
- A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset☆704Updated 3 months ago
- Automatic synthesis of RCTs☆163Updated 3 years ago
- Machine-learning based pipeline relying on LambdaMART currently used in PubMed for relevance (Best Match) searches☆42Updated 7 years ago
- A Python package to download full article PDFs from OA publications☆51Updated 9 months ago
- ICD-10 CM medical classification list by the World Health Organization☆96Updated 2 years ago
- Batch download articles based on PMID (Pubmed ID)☆131Updated last year
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆70Updated this week
- Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-the…☆121Updated 3 years ago
- Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on …☆79Updated last year
- ☆220Updated 10 months ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆91Updated 2 years ago
- Lookup PubMed records and make Publication objects with info about a scientific publication☆41Updated 2 years ago
- Web scraping PubMed database and paper information visualization☆40Updated 8 years ago
- Improving Public Access to Aggregate Content of ClinicalTrials.gov☆161Updated last week
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆70Updated 5 months ago
- a customzable pipeline for information extraction☆18Updated 5 months ago
- Python package that wraps around the ClinicalTrials.gov API☆56Updated last year
- a module to calculate the MeSH similarity☆27Updated 3 years ago
- ☆28Updated 3 months ago
- Medical Concept Annotation Tool☆511Updated 3 months ago
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆196Updated last year
- Library for clinical NLP with spaCy.☆607Updated 2 months ago
- Data structures and code to read/write BioC XML and Json.☆32Updated 2 years ago
- The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…☆43Updated last year
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆194Updated last year
- PubMed scraper for async search on a list of keywords and concurrent extraction of all found URLs, returning a DataFrame/CSV containing a…☆43Updated 4 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- all scripts used in gatortron project☆124Updated last year
- Fast, world class biomedical NER☆86Updated 7 months ago