Alternatives and similar repositories for pymed

Users that are interested in pymed are comparing it to the libraries listed below

• metapub / metapub
  Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.
  ☆122Updated last month
• titipata / pubmed_parser
  A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset
  ☆682Updated last month
• ijmarshall / robotreviewer
  Automatic synthesis of RCTs
  ☆153Updated 2 years ago
• ncbi-nlp / PubMed-Best-Match
  Machine-learning based pipeline relying on LambdaMART currently used in PubMed for relevance (Best Match) searches
  ☆42Updated 7 years ago
• ddomingof / PubMed2PDF
  A Python package to download full article PDFs from OA publications
  ☆46Updated 6 months ago
• krassowski / easy-entrez
  Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on …
  ☆79Updated last year
• ctti-clinicaltrials / aact
  Improving Public Access to Aggregate Content of ClinicalTrials.gov
  ☆149Updated last month
• billgreenwald / Pubmed-Batch-Download
  Batch download articles based on PMID (Pubmed ID)
  ☆127Updated last year
• NLPatVCU / PaperScraper
  A web scraping tool to systematically extract the text of scientific papers and corresponding metadata from university accessible journal…
  ☆206Updated 2 years ago
• OHDSI / Criteria2Query
  [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…
  ☆69Updated this week
• librairy / bio-ner
  Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-the…
  ☆116Updated 3 years ago
• mfcovington / pubmed-lookup
  Lookup PubMed records and make Publication objects with info about a scientific publication
  ☆41Updated 2 years ago
• bryand1 / icd10-cm
  ICD-10 CM medical classification list by the World Health Organization
  ☆95Updated last year
• callahantiff / OMOP2OBO
  OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies
  ☆89Updated last year
• luozhhub / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆25Updated 3 years ago
• jvfe / pytrials
  Python package that wraps around the ClinicalTrials.gov API
  ☆56Updated last year
• kormilitzin / med7
  ☆218Updated 7 months ago
• ncbi-nlp / BioWordVec
  ☆152Updated last year
• dmis-lab / BERN2
  BERN2: an advanced neural biomedical namedentity recognition and normalization tool
  ☆190Updated last year
• CogStack / MedCAT
  Medical Concept Annotation Tool
  ☆503Updated last week
• CogStack / CogStack-SemEHR
  Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
  ☆89Updated 2 years ago
• uf-hobi-informatics-lab / GatorTron
  all scripts used in gatortron project
  ☆121Updated last year
• beamandrew / cui2vec
  ☆55Updated 5 years ago
• Aitslab / BioNLP
  Repository for student projects within biomedical text mining from Lund University
  ☆54Updated 2 years ago
• ltscomputingllc / faersdbstats
  Generate safety signal statistics from FDA FAERS data
  ☆49Updated last year
• callahantiff / PheKnowLator
  PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models
  ☆192Updated last year
• OHDSI / NLPTools
  [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis
  ☆33Updated last year
• AstraZeneca / KAZU
  Fast, world class biomedical NER
  ☆87Updated 4 months ago
• OHNLP / MedTator
  A Serverless Text Annotation Tool for Corpus Development
  ☆56Updated 4 months ago
• fastdatascience / drug_named_entity_recognition
  ☆25Updated last month