soultoolman / pubmed-mapperLinks
PubMed Mapper: A Python library that map PubMed XML to Python object
☆46Updated 2 years ago
Alternatives and similar repositories for pubmed-mapper
Users that are interested in pubmed-mapper are comparing it to the libraries listed below
Sorting:
- Batch download articles based on PMID (Pubmed ID)☆129Updated last year
- Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on …☆79Updated last year
- ☆41Updated 5 years ago
- ☆22Updated 2 years ago
- ☆20Updated 2 years ago
- Cross matching drugs from different databases ( Drugbank, STITCH, ChEMBL PubChem, UMLS, TTD, KEGG, ZINC ) and saving in a structured TSV …☆31Updated last year
- Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases☆51Updated 2 months ago
- Python script that downloads all pubmed abstracts corresponding to user-specified keyword searches, by performing automated NCBI E-utilit…☆31Updated 5 years ago
- Retrieve and process PubTator annotations☆44Updated 2 years ago
- Biomedical knowledge mining using GOSemSim and clusterProfiler☆80Updated 2 years ago
- Repository for student projects within biomedical text mining from Lund University☆56Updated 2 years ago
- Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing☆32Updated 8 years ago
- Disease Ontology Semantic and Enrichment analysis☆121Updated last week
- a module to calculate the MeSH similarity☆26Updated 3 years ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- ☆38Updated 4 months ago
- Biological Network Integration using Convolutions☆62Updated last year
- Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)☆112Updated 3 years ago
- A framework for keeping biomedical text mining result up-to-date☆42Updated 5 years ago
- ☆24Updated 4 years ago
- ☆31Updated last year
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆65Updated 4 years ago
- Explainable AI for Bioinformatics☆125Updated 2 years ago
- Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer☆41Updated 2 years ago
- ☆19Updated 3 months ago
- A combined deep learning tool for automated recognition of human phenotype ontology☆26Updated 2 years ago
- ☆25Updated last year
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Updated 3 years ago
- Network-based project to explore gene connectivity through biological scales☆23Updated 11 months ago
- API providing access to papers and authors scraped from biorxiv.org☆57Updated 2 years ago