PubMed Mapper: A Python library that map PubMed XML to Python object
☆46Mar 23, 2023Updated 3 years ago
Alternatives and similar repositories for pubmed-mapper
Users that are interested in pubmed-mapper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Jan 27, 2022Updated 4 years ago
- Nextflow pipeline to convert BAM to FASTQ, align, perform QC, assess targeted coverage, call gSNP, call sSNV, call mtSNV, call SVs, call …☆20Nov 24, 2025Updated 7 months ago
- python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.☆36Mar 9, 2026Updated 4 months ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Mar 29, 2025Updated last year
- Tool that converts between BioC XML files and BioC JSON files☆19Jan 10, 2017Updated 9 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Python library for work with BioCreative files☆13Mar 28, 2018Updated 8 years ago
- single RNA-seq analysis of human keloid samples☆13May 25, 2021Updated 5 years ago
- [ACL 2023] Few-shot Reranking for Multi-hop QA via Language Model Prompting☆27Oct 19, 2025Updated 8 months ago
- Batch download articles based on PMID (Pubmed ID)☆137Nov 8, 2023Updated 2 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆88Oct 6, 2023Updated 2 years ago
- MR project investigating the mediating role of mammographic density in the childhood body size and breast cancer relationship☆11May 14, 2024Updated 2 years ago
- ☆24Nov 30, 2020Updated 5 years ago
- Get literature information via PubMed ID, such as the author, title, journal_name, pub_date and so on.☆17Sep 11, 2016Updated 9 years ago
- MilGNet: Deep Multiple Instance Learning on Heterogeneous Graph for Drug-disease Association Prediction☆18Nov 24, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Dec 16, 2016Updated 9 years ago
- Sliding Window Inference for Network Generation☆10Feb 14, 2018Updated 8 years ago
- Browser-based tool for visualizing and analyzing germline copy number variants in genomic data☆12Nov 7, 2024Updated last year
- 将速铂下载工具进行封装，以便高效方便地批量下载SRA测序数据。☆11Sep 1, 2020Updated 5 years ago
- ☆13Jun 6, 2024Updated 2 years ago
- Python package for compositional data analysis☆14Dec 1, 2023Updated 2 years ago
- ☆13Sep 21, 2023Updated 2 years ago
- R codes and data for 'Smoking, Alcohol consumption, and 24 Gastrointestinal Diseases: Mendelian Randomization Analysis'☆11Mar 5, 2023Updated 3 years ago
- Secondary structure prediction of long non-coding RNA: review and experimental comparison of existing approaches, L.A. Bugnon, A.A. Edera…☆21Mar 17, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- 研一深度学习课程作业 Bi-LSTM + Attention （nice code）☆11Jan 13, 2020Updated 6 years ago
- Scripts and data files used to generate the figures of the Crohn's single-cell RNA-seq paper "Single-cell analysis of Crohn’s disease les…☆19Aug 29, 2019Updated 6 years ago
- ☆24Mar 1, 2023Updated 3 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆35Apr 4, 2025Updated last year
- Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data☆11Jun 29, 2017Updated 9 years ago
- ☆11Jul 8, 2024Updated 2 years ago
- REDDA: integrating multiple biological relations to heterogeneous graph neural network for drug-disease association prediction☆21Nov 11, 2024Updated last year
- An ontology for describing the phenology of individual plants and populations of plants, and for integrating plant phenological data acro…☆19May 6, 2026Updated 2 months ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆16Mar 24, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Scripts, data files and ontologies for the FLOPO project☆11Jun 29, 2026Updated last week
- A simple implementation of the paper "Disease Prediction via Graph Neural Networks".☆22Feb 3, 2021Updated 5 years ago
- A Novel Approach for Effective Multi-View Clustering with Information-Theoretic Perspective is a paper accepted by NeurIPS 2023☆10May 15, 2024Updated 2 years ago
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Mar 20, 2024Updated 2 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆22May 11, 2018Updated 8 years ago
- Murine version of MCP-counter, a tool to estimate the immune and stromal composition of heterogeneous tissue, from transcriptomic data☆12Jun 30, 2022Updated 4 years ago
- ☆11Apr 26, 2021Updated 5 years ago