nipreps / nirodentsLinks
☆13Updated last year
Alternatives and similar repositories for nirodents
Users that are interested in nirodents are comparing it to the libraries listed below
Sorting:
- Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain☆33Updated last week
- fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/☆48Updated last week
- Docker version of HIPS-THOMAS☆33Updated 2 months ago
- A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support☆35Updated last month
- BrkRaw: A comprehensive tool to access raw Bruker Biospin MRI data☆47Updated last month
- ☆10Updated 4 years ago
- Computational Anatomy Toolbox for SPM12 or SPM25☆44Updated 2 weeks ago
- A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)☆77Updated this week
- Small Animal Magnetic Resonance Imaging via Python.☆43Updated last year
- MP2RAGE Scripts - T1 map correction & Background noise removal☆69Updated 2 years ago
- The ANTsX Ecosystem for Mapping the Mouse Brain☆17Updated 3 weeks ago
- Lightweight framework for neuroimaging-clinical data organization/processing☆36Updated 2 weeks ago
- Bruker ParaVision to NIfTI conversion☆14Updated 5 years ago
- precon_all surface pipline☆29Updated last week
- Processing tools for high-resolution neuroimaging☆73Updated last week
- ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…☆56Updated this week
- A Rat fMRI multi-center study☆33Updated 3 years ago
- A twolevel deformation based morphometry pipeline using ants☆13Updated 7 months ago
- Stand alone fMRI software suite for layer-fMRI analyses.☆104Updated last month
- Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes☆43Updated this week
- Multi-format in vivo MR spectroscopy conversion to NIFTI☆34Updated 2 months ago
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆73Updated 2 months ago
- niimath - a clone of fslmaths. Try the live demo:☆71Updated 2 months ago
- Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data☆78Updated 4 years ago
- Medical image format converter: from raw Bruker ParaVision to nifti.☆31Updated 2 years ago
- U-Net based automatic Rat brain-mask Segmentation tool, developed by Hsu☆18Updated 4 years ago
- TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity☆61Updated last year
- QSMxT is an end-to-end software toolbox for Quantitative Susceptibility Mapping.☆54Updated 2 weeks ago
- Reconstruction of preprocessed q-space images (dMRI)☆18Updated 3 weeks ago
- Linear framework to combine tractography and tissue microstructure estimation with diffusion MRI☆47Updated 2 weeks ago