nipreps / nirodents

Related projects ⓘ

Alternatives and complementary repositories for nirodents

• ntustison / ANTsXMouseBrainMapping
  The ANTsX Ecosystem for Mapping the Mouse Brain
  ☆10Updated this week
• nipreps / fmriprep-rodents
  fMRIPrep for Rodents
  ☆12Updated last year
• Aswendt-Lab / AIDAmri
  Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain
  ☆30Updated last week
• CAMRIatUNC / RodentMRISkullStripping
  U-Net based automatic Rat brain-mask Segmentation tool, developed by Hsu
  ☆17Updated 3 years ago
• yu02019 / BEN
  ☆24Updated 6 months ago
• CoBrALab / RABIES
  fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/e…
  ☆34Updated last month
• nipreps / sdcflows
  Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes
  ☆32Updated this week
• nipreps / sops-cookiecutter
  Template repo for bootstrapping and maintaining SOPs (Standard operation procedures)
  ☆9Updated last year
• jordandekraker / Hippocampal_AutoTop
  ☆10Updated 3 years ago
• nipreps / dmriprep
  dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…
  ☆64Updated 11 months ago
• BrkRaw / brkraw
  BrkRaw: A comprehensive tool to access raw Bruker Biospin MRI data
  ☆45Updated 4 months ago
• nipreps / eddymotion
  Open-source eddy-current and head-motion correction for dMRI.
  ☆14Updated last week
• CoBrALab / optimized_antsMultivariateTemplateConstruction
  A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support
  ☆23Updated 2 months ago
• nipy / nitransforms
  a standalone fork of nipy/nibabel#656
  ☆28Updated this week
• neurolabusc / Bru2Nii
  Bruker ParaVision to NIfTI conversion
  ☆12Updated 4 years ago
• nipy / dmriprep
  MOVED TO https://github.com/nipreps/dmriprep
  ☆17Updated last year
• scilus / scilpy
  The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
  ☆62Updated this week
• Diffusion-MRI / awesome-preclinical-diffusion-mri
  ☆16Updated 11 months ago
• khanlab / hippunfold
  BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)
  ☆49Updated 3 months ago
• nipreps / nibabies
  fMRIPrep-Infants - A robust, transparent workflow tailored for neonate and infant MRI
  ☆23Updated last month
• grandjeanlab / MultiRat
  A Rat fMRI multi-center study
  ☆32Updated 2 years ago
• QMICodeBase / TORTOISEV4
  Official TORTOISE Diffusion MRI Processing Pipeline V4 Source Code and Documentation
  ☆21Updated 3 weeks ago
• bids-apps / freesurfer
  BIDS app wrapping recon-all from FreeSurfer
  ☆41Updated 2 weeks ago
• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆61Updated this week
• nighres / nighres
  Processing tools for high-resolution neuroimaging
  ☆63Updated last month
• kwagstyl / surface_tools
  Tools for mesh surface-based operations
  ☆34Updated 5 years ago
• yeatmanlab / pyAFQ
  Automated Fiber Quantification ... in Python
  ☆57Updated last month
• CoBrALab / twolevel_ants_dbm
  A twolevel deformation based morphometry pipeline using ants
  ☆10Updated 3 months ago
• MASILab / PreQual
  An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images
  ☆44Updated 3 months ago
• miykael / parcellation_fragmenter
  Fragments FreeSurfer parcellation annotation in N-equal sized parcels
  ☆27Updated 4 years ago