GPU-accelerated RCTD for spatial transcriptomics
☆63Oct 30, 2026Updated this week
Alternatives and similar repositories for rctd-py
Users that are interested in rctd-py are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The spatial representation learning for single-cell spatial transcriptomics☆17Aug 4, 2026Updated 2 months ago
- List of Spatial Transcriptomics related Tools organized per category☆211Sep 9, 2026Updated last month
- Profile purification of single-cell spatial transcriptomics data☆68Jun 29, 2026Updated 4 months ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆199Oct 17, 2026Updated 2 weeks ago
- SpotSweeper-py: Python version of SpotSweeper package☆11Sep 6, 2026Updated last month
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- LARIS maps ligand-receptor signalling in spatial transcriptomics within and across tissue states☆18Oct 13, 2026Updated 2 weeks ago
- scVIVA-Tools: A unified toolkit for spatial transcriptomics analysis☆15Updated this week
- Links between modalities in mudata☆17Oct 16, 2026Updated 2 weeks ago
- Single-cell analysis methods in Rust☆36Jun 26, 2026Updated 4 months ago
- A Snakemake pipeline for Xenium data analysis.☆28Jul 22, 2026Updated 3 months ago
- capturing spatial colocalization and interaction in the TME using topological analysis in spatial transcriptomics data☆12May 14, 2025Updated last year
- Pareto Task Inference in Python☆23Oct 19, 2026Updated last week
- An R meta-package for the analysis of Next Generation Sequencing data☆32Updated this week
- ☆11Oct 4, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆203Updated this week
- ☆37May 27, 2026Updated 5 months ago
- ☆42Oct 18, 2026Updated last week
- ☆13Jul 31, 2025Updated last year
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆83Feb 10, 2026Updated 8 months ago
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆35Nov 30, 2023Updated 2 years ago
- Cross-attention-based cell-cell interaction inference from ST data.☆22Updated this week
- ☆14Jun 11, 2023Updated 3 years ago
- ☆36Oct 22, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆37Jun 15, 2026Updated 4 months ago
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆90Oct 12, 2026Updated 2 weeks ago
- Visualising data frames as funky heatmaps 📊, the Python implementation☆27Feb 6, 2025Updated last year
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆22Jun 9, 2025Updated last year
- Malva algorithm for indexing and index querying☆26Oct 16, 2026Updated 2 weeks ago
- Implementation of multiplex Leiden for analysis of spatial omics data☆22Oct 5, 2026Updated 3 weeks ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆164Sep 18, 2026Updated last month
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆408Updated this week
- Enhanced stain normalization for histopathology images with batch processing support. Optimized for CPU, GPU (CUDA), and MPS (Apple Silic…☆26Aug 9, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆20Sep 19, 2025Updated last year
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆18Jun 5, 2026Updated 4 months ago
- R package to process BUS files☆11Mar 18, 2026Updated 7 months ago
- Spatial One☆32Oct 31, 2024Updated last year
- Analysis of snRNA-seq2 data coming from 3 months old mouse liver, dissecting the influence ploidy has on gene expression.☆14Dec 6, 2021Updated 4 years ago
- Python bindings for SingleR☆16Aug 14, 2026Updated 2 months ago
- Spatial and multiomic visualization and analysis library☆82Updated this week