pymia: A Python package for data handling and evaluation in deep learning-based medical image analysis
☆62Nov 22, 2024Updated last year
Alternatives and similar repositories for pymia
Users that are interested in pymia are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for the MICCAI 2019 paper Balsiger et al., Learning Shape Representation on Sparse Point Clouds for Volumetric Image Segmentation☆19Nov 22, 2022Updated 3 years ago
- ☆11Nov 25, 2025Updated 11 months ago
- Algorithm to simulate resection surgery on brain MRI scans. Published in MICCAI 2020, extended in IJCARS.☆14Jan 22, 2026Updated 9 months ago
- python bindings for ROBEX brain extraction☆10Dec 26, 2022Updated 3 years ago
- Data driven 3D brain visualisation of semiology. Semiology to anatomy translator based on over 4600 patients from 309 peer-reviewed artic…☆12Sep 21, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Docker for running stroke lesion core segmentation☆31Dec 15, 2020Updated 5 years ago
- Code accompanying the paper "Radiomics for glioblastoma survival analysis in pre-operative MRI: exploring feature robustness, class bound…☆12Aug 9, 2020Updated 6 years ago
- Code for the Medical Segmentation Decathlon Challenge at MICCAI 2018☆18Oct 31, 2018Updated 8 years ago
- Medical imaging processing for AI applications.☆2,451Updated this week
- Convert the TotalSegmentator dataset into the nnUNet format☆20Aug 1, 2023Updated 3 years ago
- blob loss example implementation☆37Aug 3, 2024Updated 2 years ago
- ☆10Jan 17, 2023Updated 3 years ago
- a tool to segment the hypothalamus and associated subunits on T1-weighted MRI scans☆27Jan 6, 2023Updated 3 years ago
- Deep learning for mortality prediction from low-dose CT images☆13Aug 30, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆15Mar 12, 2024Updated 2 years ago
- Website for NA-MIC Project Weeks☆93Updated this week
- Automated processing of MRI in neuro-oncology (combining HD-BET, image co-registration, and HD-GLIO in one container)☆35Jun 5, 2022Updated 4 years ago
- Transparent and reproducible medical image processing pipelines in Python.☆61Sep 3, 2026Updated 2 months ago
- Accepted in MIDL 2020☆32Apr 22, 2021Updated 5 years ago
- Implemention of the Paper "MultiTalent: A Multi-Dataset Approach to Medical Image Segmentation"☆72Oct 23, 2026Updated 2 weeks ago
- Adversarial Policy Gradient for Medical Deep Learning Image Augmentation☆13Oct 11, 2019Updated 7 years ago
- A deep learning python package for neuroimaging data. Made by:☆129Jun 24, 2020Updated 6 years ago
- ☆10Nov 15, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Medical Image Radiomics Processor☆89Sep 23, 2026Updated last month
- The first GANs-based omics-to-omics translation framework☆15Sep 5, 2023Updated 3 years ago
- Library for generating images by sampling a GMM conditioned on label maps☆30Mar 29, 2024Updated 2 years ago
- RootPainter3D: Interactive-machine-learning enables rapid and accurate contouring for radiotherapy☆25Jun 5, 2024Updated 2 years ago
- Convert numpy mask to dicom rtstruct☆13Feb 28, 2023Updated 3 years ago
- Contrast-agnostic segmentation of MRI scans☆589Jul 17, 2024Updated 2 years ago
- Normalize MR image intensities in Python☆340Oct 30, 2026Updated last week
- deep neural network-based image translation/synthesis☆27Sep 24, 2021Updated 5 years ago
- Library to compute surface distance based performance metrics for segmentation tasks.☆603Feb 19, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Easy Volumetric Segmentation with Deep Learning☆32Mar 30, 2026Updated 7 months ago
- O-MedAL: Online Active Deep Learning for Medical Image Analysis. This repo contains code for the paper.☆18Mar 20, 2022Updated 4 years ago
- Toolkit for fast SGRT application development☆11Jun 19, 2025Updated last year
- PyTorch implementation of HighRes3DNet☆56Jul 19, 2025Updated last year
- Python wrapper around DEEDS - efficient algorithm for 3D discrete deformable image registration, reaching the highest accuracy in several…☆17Jul 1, 2022Updated 4 years ago
- semantic segmentation for magnetic resonance imaging☆16Sep 21, 2021Updated 5 years ago
- A framework for data augmentation for 2D and 3D image classification and segmentation☆1,177Oct 29, 2026Updated last week