Convert coarse-grained protein structure to all-atom model
☆62Jun 7, 2025Updated last year
Alternatives and similar repositories for cg2all
Users that are interested in cg2all are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- COSMO: COarse-grained Simulation of intrinsically disordered prOteins with openMM☆15Jul 14, 2026Updated last month
- Demo of diffusion models #DDPM applied to molecular dynamics of small peptide☆14Jan 26, 2024Updated 2 years ago
- GPU accelerating computing for Bayesian inference of electron microscopy images. BioEM is a publicly available software that enables the …☆13Apr 7, 2023Updated 3 years ago
- Generate intrinsically disordered peptide conformations via machine learning☆26May 26, 2024Updated 2 years ago
- ☆20Apr 7, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- PeptoneBench: evaluating protein ensembles across the order-disorder continuum☆22Mar 24, 2026Updated 5 months ago
- Build conformational representations of Intrinsically Disordered Proteins and Regions by a guided sampling of the protein torsion space☆36Jun 22, 2026Updated 2 months ago
- ☆66Dec 10, 2025Updated 8 months ago
- ☆48Mar 7, 2026Updated 5 months ago
- DynamicGT: a dynamic-aware geometric transformer model to predict protein binding interfaces in flexible and disordered regions☆17Jun 18, 2026Updated 2 months ago
- LAST: Latent Space Assisted Adaptive Sampling for Protein Trajectories☆13Dec 17, 2022Updated 3 years ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆62Jan 28, 2026Updated 7 months ago
- ☆52Aug 24, 2026Updated last week
- Deep generative modeling of protein structural ensembles☆41May 27, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆20Jan 20, 2023Updated 3 years ago
- A geometric deep learning method for refining and assessing protein complex structures.☆16Oct 22, 2022Updated 3 years ago
- ☆28Mar 3, 2024Updated 2 years ago
- A bunch of shell utilities for dealing the silent files☆80Apr 6, 2026Updated 4 months ago
- Generative backmapping of coarse-grained molecular systems using an equivariant graph neural network and flow-matching☆12Sep 17, 2025Updated 11 months ago
- PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.☆153Feb 12, 2025Updated last year
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Apr 13, 2026Updated 4 months ago
- ☆20May 21, 2026Updated 3 months ago
- TS2CG version 2☆29Apr 18, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Generative diverse protein backbones by protein language model☆35Feb 27, 2026Updated 6 months ago
- ☆16Sep 29, 2025Updated 11 months ago
- Molstar Stories Webapp☆22May 19, 2026Updated 3 months ago
- ☆152May 18, 2026Updated 3 months ago
- DiAMoNDBack: Diffusion-denoising Autoregressive Model for Non-Deterministic Backmapping of Cα Protein Traces☆18May 7, 2025Updated last year
- OpenMM implementation of MOFF, MRG-CG, and HPS models.☆44Jul 29, 2026Updated last month
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated 2 years ago
- Code for AlphaFold Distillation for Protein Design☆28Sep 18, 2025Updated 11 months ago
- GraphVAMPnets combines graph neural networks with variational approach for Markovian process (VAMP) theory to identify the slow collectiv…☆13Feb 20, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Bib'23: Improved the Heterodimer Protein Complex Prediction with Protein Language Models☆15Dec 21, 2023Updated 2 years ago
- ☆118Jan 3, 2026Updated 8 months ago
- ☆185Jul 24, 2026Updated last month
- ☆19Dec 23, 2024Updated last year
- Algorithm for identifying hydrogen bond networks in CG proteins to implement Go-like Martini 3 models☆17Oct 25, 2024Updated last year
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆63Dec 16, 2025Updated 8 months ago
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting