AdaptInfer / ContextualizedLinks
An SKLearn-style toolbox for estimating and analyzing models, distributions, and functions with context-specific parameters.
☆76Updated 3 weeks ago
Alternatives and similar repositories for Contextualized
Users that are interested in Contextualized are comparing it to the libraries listed below
Sorting:
- ☆28Updated 3 years ago
- Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)☆73Updated 2 years ago
- The need to understand cell developmental processes has spawned a plethora of computational methods for discovering hierarchies from scRN…☆150Updated 4 years ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆42Updated last year
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆100Updated last week
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell lev…☆184Updated 2 years ago
- Contrastive neighbor embeddings☆57Updated 3 months ago
- ☆19Updated 2 years ago
- A repository with exploration into using transformers to predict DNA ↔ transcription factor binding☆88Updated 3 years ago
- Code for CELL-E: Biological Zero-Shot Text-to-Image Synthesis for Protein Localization Prediction☆29Updated 2 years ago
- Benchmark agents on BioML tasks☆63Updated 4 months ago
- ☆58Updated 7 months ago
- DeepRC: Immune repertoire classification with attention-based deep massive multiple instance learning☆125Updated 2 years ago
- Differential Robust PCA☆13Updated 3 years ago
- ☆79Updated 3 weeks ago
- Exploring the space of drug combinations to discover synergistic drugs using Active Learning☆24Updated last year
- Learning disentangled representations of single-cell data for high-quality generation☆16Updated last year
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆43Updated 3 years ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆128Updated last year
- Biological Network Integration using Convolutions☆63Updated 2 years ago
- TISSUE (Transcript Imputation with Spatial Single-cell Uncertainty Estimation) provides tools for estimating well-calibrated uncertainty …☆41Updated last year
- ☆66Updated 2 years ago
- Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data☆78Updated 2 years ago
- Archetypal Analysis network (AAnet)☆40Updated last year
- Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits☆11Updated 4 years ago
- Effect of tokenization on transformers for biological sequence☆21Updated last month
- Discovering novel cell types across heterogenous single-cell experiments☆123Updated 3 years ago
- A spectral method for assessing and combining multiple data visualizations☆50Updated 2 years ago
- ☆39Updated 4 months ago
- Pretraining infrastructure for multi-hybrid AI model architectures☆199Updated 6 months ago