lucidrains / hyena-dna
Fork of HyenaDNA, a long-range genomic foundation model built with Hyena
☆9Updated last year
Alternatives and similar repositories for hyena-dna:
Users that are interested in hyena-dna are comparing it to the libraries listed below
- Your favourite classical machine learning algos on the GPU/TPU☆20Updated 3 months ago
- My own attempt at a long context genomics model, leveraging recent advances in long context attention modeling (Flash Attention + other h…☆52Updated last year
- JAX/Flax implementation of the Hyena Hierarchy☆34Updated 2 years ago
- Minimal Implimentation of VCRec (2024) for collapse provention.☆16Updated 2 months ago
- Pembrolizumab-like Antibody Hallucination using AlphaFold2☆16Updated last year
- Implementation of Tranception, an attention network, paired with retrieval, that is SOTA for protein fitness prediction☆31Updated 2 years ago
- Implementation of the Pairformer model used in AlphaFold 3☆12Updated this week
- Implementation of a holodeck, written in Pytorch☆17Updated last year
- Toy genetic algorithm in Pytorch☆39Updated this week
- Source code for the paper "Positional Attention: Out-of-Distribution Generalization and Expressivity for Neural Algorithmic Reasoning"☆14Updated 2 months ago
- Pytorch implementation of a simple way to enable (Stochastic) Frame Averaging for any network☆49Updated 9 months ago
- A virtual dog-sitter that tracks, classifies, and responds to dog audio.☆35Updated 3 years ago
- Generative cellular automaton-like learning environments for RL.☆19Updated 2 months ago
- alternative way to calculating self attention☆18Updated 11 months ago
- nanoGPT using Equinox☆13Updated 2 years ago
- High-performance tokenized language data-loader for Python C++ extension☆13Updated 9 months ago
- The project proposal template for OpenBioML community projects.☆18Updated 2 years ago
- Implementation of an Attention layer where each head can attend to more than just one token, using coordinate descent to pick topk☆46Updated last year
- ☆34Updated last year
- ☆61Updated last year
- Implementation of Gradient Agreement Filtering, from Chaubard et al. of Stanford, but for single machine microbatches, in Pytorch☆24Updated 3 months ago
- Self contained pytorch implementation of a sinkhorn based router, for mixture of experts or otherwise☆34Updated 7 months ago
- Exploring an idea where one forgets about efficiency and carries out attention across each edge of the nodes (tokens)☆50Updated last month
- ☆27Updated 9 months ago
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆96Updated 2 years ago
- Engineering the state of RNN language models (Mamba, RWKV, etc.)☆32Updated 11 months ago
- An implementation of ESM2 in Equinox+JAX☆25Updated 2 months ago
- Implementation of GateLoop Transformer in Pytorch and Jax☆87Updated 10 months ago
- ☆38Updated 3 years ago
- Associative scan package for DRYing some code between repos☆11Updated this week