lucidrains / hyena-dnaLinks
Fork of HyenaDNA, a long-range genomic foundation model built with Hyena
☆9Updated last year
Alternatives and similar repositories for hyena-dna
Users that are interested in hyena-dna are comparing it to the libraries listed below
Sorting:
- My own attempt at a long context genomics model, leveraging recent advances in long context attention modeling (Flash Attention + other h…☆53Updated 2 years ago
- Your favourite classical machine learning algos on the GPU/TPU☆20Updated 7 months ago
- JAX/Flax implementation of the Hyena Hierarchy☆34Updated 2 years ago
- The project proposal template for OpenBioML community projects.☆18Updated 2 years ago
- Generative cellular automaton-like learning environments for RL.☆19Updated 6 months ago
- Code reproducing the results in the article Aguilera, M, Morales, PA, Rosas, FE, M & Shimazaki H (2025)☆34Updated last month
- Toy genetic algorithm in Pytorch☆53Updated 3 months ago
- ☆61Updated last year
- Explorations into whether a transformer with RL can direct a genetic algorithm to converge faster☆70Updated 2 months ago
- Implementation of the Pairformer model used in AlphaFold 3☆14Updated last week
- Pytorch implementation of a simple way to enable (Stochastic) Frame Averaging for any network☆50Updated last year
- Implementation of GateLoop Transformer in Pytorch and Jax☆89Updated last year
- ☆29Updated 6 months ago
- alternative way to calculating self attention☆18Updated last year
- An annotated implementation of the Hyena Hierarchy paper☆33Updated 2 years ago
- A virtual dog-sitter that tracks, classifies, and responds to dog audio.☆37Updated 3 years ago
- Pretraining Code for METAGENE-1☆67Updated 7 months ago
- Pembrolizumab-like Antibody Hallucination using AlphaFold2☆16Updated last year
- Implementation of an Attention layer where each head can attend to more than just one token, using coordinate descent to pick topk☆46Updated 2 years ago
- ☆27Updated last year
- Minimal Implimentation of VCRec (2024) for collapse provention.☆17Updated 6 months ago
- Implementation of a holodeck, written in Pytorch☆18Updated last year
- gzip Predicts Data-dependent Scaling Laws☆35Updated last year
- Implementation of Gradient Agreement Filtering, from Chaubard et al. of Stanford, but for single machine microbatches, in Pytorch☆25Updated 6 months ago
- Engineering the state of RNN language models (Mamba, RWKV, etc.)☆32Updated last year
- Implementation of MambaFormer in Pytorch ++ Zeta from the paper: "Can Mamba Learn How to Learn? A Comparative Study on In-Context Learnin…☆21Updated 3 weeks ago
- ☆15Updated 2 years ago
- ☆43Updated last year
- Swarming algorithms like PSO, Ant Colony, Sakana, and more in PyTorch 😊☆129Updated 2 weeks ago
- Clean RL implementation using MLX☆32Updated last year