dermatologist / pyomopLinks
Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries, MCP server and FHIR import.
☆57Updated last week
Alternatives and similar repositories for pyomop
Users that are interested in pyomop are comparing it to the libraries listed below
Sorting:
- [under development] ETL materials to support proposal for CDM enhancements for clinical trial data☆24Updated 4 years ago
- ETL Tool for converting datasets to OMOP CDM☆35Updated 3 years ago
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆38Updated 2 years ago
- FHIR to pandas dataframe for data analytics, AI and ML!☆44Updated this week
- Pilot model and converter for integration of radiology data into OMOP-CDM☆23Updated 6 years ago
- ☆31Updated 7 years ago
- FHIR Ontop OMOP Implementation☆20Updated last year
- An R package that facilitates access to a variety of OMOP CDM sample data sets.☆46Updated 8 months ago
- Hephaestus - ETL and ML tools for OHDSI - OMOP CDM☆13Updated 4 months ago
- Main OMOPonFHIR Settings☆46Updated 3 years ago
- Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM☆72Updated 5 months ago
- Course materials for OHDSI ETL tutorial☆53Updated 4 months ago
- Transform the OMOP model to graph model☆27Updated last year
- ☆14Updated 11 months ago
- Oncology Working Group Repository☆59Updated last month
- Training materials for Vocabulary & CDM Tutorial.☆22Updated 6 years ago
- Virtual Machine containing SynPUF data in OMOP CDM, a RDBS including query client, WebAPI, ATLAS, R and Python.☆58Updated 4 years ago
- Broadsea deploys the core OHDSI technology stack (Atlas & R Hades), using cross-platform Docker container technology.☆88Updated last month
- OHDSI Ananke - A Tool for Mapping Between OHDSI Concept Identifiers to Unified Medical Language System (UMLS) identifiers☆15Updated 5 years ago
- ☆29Updated 2 years ago
- Workproducts to ETL CMS datasets into OMOP Common Data Model☆103Updated 3 years ago
- ☆17Updated 7 years ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆34Updated 2 years ago
- OMOP <-> FHIR mapper☆11Updated 2 years ago
- eds-scikit is a Python library providing tools to process and analyse OMOP data☆44Updated last year
- A tool to help improve data quality standards in observational data science.☆171Updated last week
- FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured informat…☆74Updated last week
- Runtime repository for the SNOMED CT Entity Linking challenge on DrivenData☆14Updated last year
- FHIR to OMOP using PySpark on AWS Glue☆14Updated 4 years ago
- ETL-CDMBuilder is a repo containing a .NET Core application to perform ETL to OMOP CDM for multiple databases☆55Updated last week