Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries, MCP server and FHIR import.
☆60Mar 18, 2026Updated this week
Alternatives and similar repositories for pyomop
Users that are interested in pyomop are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hephaestus - ETL and ML tools for OHDSI - OMOP CDM☆13Sep 18, 2025Updated 6 months ago
- FHIR to pandas dataframe for data analytics, AI and ML!☆44Mar 14, 2026Updated last week
- Streamlined Data Mapping to OMOP☆21Updated this week
- OMOP <-> FHIR mapper☆11Mar 6, 2023Updated 3 years ago
- [Under development] Assessment of Pre-trained Observational Large Language-models in OHDSI (APOLLO)☆14Jun 18, 2024Updated last year
- NPM module to convert FHIR Questionnaire JSON to JSON Schema for form rendering.☆22Mar 9, 2026Updated last week
- FHIR Ontop OMOP Implementation☆20May 8, 2024Updated last year
- Cohort Generation for the OMOP Common Data Model☆14Mar 2, 2026Updated 2 weeks ago
- Automation code and documentation for standing up the OHDSI toolstack in an AWS environment☆76May 16, 2023Updated 2 years ago
- Tidy R programming with the OMOP common data model☆21Jan 4, 2026Updated 2 months ago
- ☆14Mar 6, 2025Updated last year
- InspectOmop is a lightweight python 3 package that assists in the extraction of electronic health record(EHR) data from relational databa…☆15Mar 6, 2025Updated last year
- This is a script to deploy OSCAR EMR in a docker container.☆13Nov 28, 2019Updated 6 years ago
- FHIR to OMOP using PySpark on AWS Glue☆14May 8, 2021Updated 4 years ago
- OHDSI Ananke - A Tool for Mapping Between OHDSI Concept Identifiers to Unified Medical Language System (UMLS) identifiers☆15Sep 28, 2020Updated 5 years ago
- The FHIRForm framework for managing healthcare eForms☆17Oct 5, 2022Updated 3 years ago
- Drishti | An Open mHealth sense-plan-act framework based on FHIR!☆11Oct 7, 2022Updated 3 years ago
- skinmesh: Machine learning for facial analysis☆12Mar 18, 2023Updated 3 years ago
- Clinical Research Informatics☆13Aug 23, 2023Updated 2 years ago
- ETL UK-Biobank☆16Nov 17, 2022Updated 3 years ago
- npm package for accessing UMLS REST APIs (unofficial)☆11May 7, 2023Updated 2 years ago
- This repository contains the formal syntax and valid example files for each computable language in the SNOMED CT Family of Languages.☆15Mar 30, 2023Updated 2 years ago
- Snow Owl Terminology Server. This version is no longer maintained. Please use the upstream version or the alternate Snowstorm Terminology…☆11Feb 11, 2020Updated 6 years ago
- Shiny apps in this repository will be automatically deployed to the OHDSI Shiny server.☆27Feb 18, 2025Updated last year
- ETL Tool for converting datasets to OMOP CDM☆36Nov 24, 2022Updated 3 years ago
- Render FHIR Questionnaire as a web form using FHIRFormJS☆21Feb 6, 2024Updated 2 years ago
- Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.☆262Updated this week
- Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)☆16Jan 17, 2022Updated 4 years ago
- Basic entity linker for the SNOMED EL Challenge☆14Jan 22, 2024Updated 2 years ago
- This is an R package that implements a library of standard queries that run against the OMOP-CDM.☆18Jun 7, 2024Updated last year
- A repository of all code and resources of my published blog articles.☆36Dec 21, 2025Updated 3 months ago
- Natural Language to SQL Queries in the OMOP CDM Datasets☆11Jun 12, 2023Updated 2 years ago
- Python package for machine learning for healthcare using a OMOP common data model☆110Jun 17, 2023Updated 2 years ago
- Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a…☆146Dec 2, 2025Updated 3 months ago
- Winners of the SNOMED CT Entity Linking Challenge☆49Apr 11, 2024Updated last year
- Transform the OMOP model to graph model☆27Dec 13, 2024Updated last year
- Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J☆16Jun 27, 2024Updated last year
- COVID-19 / SARS-CoV-2 FHIR Profiles Implementation Guide (IG)☆17Aug 9, 2021Updated 4 years ago
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆39Nov 10, 2023Updated 2 years ago