petersenpeter / CellExplorer
CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cells acquired using extracellular electrodes.
☆98Updated last month
Alternatives and similar repositories for CellExplorer:
Users that are interested in CellExplorer are comparing it to the libraries listed below
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆72Updated 4 months ago
- WIP: Python port of Kilosort2☆50Updated last year
- Utilities for managing Neuropixel datasets and Kilosort results☆45Updated last year
- SpikeGLX recording system GUI [Neuropixels NI]☆84Updated last week
- Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days☆49Updated this week
- Multi-probe trajectory planning in an intuitive 3D environment☆52Updated this week
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆115Updated this week
- Functions to assess quality of spike sorting results☆32Updated last year
- cortex lab code for electrophysiology☆77Updated 11 months ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆57Updated last month
- CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation☆21Updated this week
- Archived code for reading data saved by the Open Ephys GUI☆59Updated last year
- pynapple collaborative data analysis (high level python scripts)☆37Updated 10 months ago
- pyqt5 dependent applications for IBL sessions☆25Updated last week
- Histology processing☆65Updated 10 months ago
- ☆51Updated 5 months ago
- A curated list of awesome Neuropixels resources.☆85Updated last month
- Python package to handle probe layout, geometry and wiring to device.☆55Updated this week
- miniscope analysis pipeline with interactive visualizations☆93Updated 6 months ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆110Updated 5 months ago
- Tutorials for using SpikeInterface on extracellular datasets.☆61Updated last year
- Package for automatic post-processing and merging of multiple spike-sorting analyses.☆25Updated 7 months ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆61Updated last year
- Registration of cells across sessions.☆71Updated 5 months ago
- Python code implementing the ZETA-test☆25Updated 4 months ago
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆53Updated this week
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆33Updated 2 weeks ago
- Python-based tools for pre-, post-processing, validating, and curating spike sorting datasets.☆49Updated 3 years ago
- Tools to work with Allen Inst CCF data in matlab☆127Updated 10 months ago
- Code for internal lab sharing - polishing has started but is by no means complete☆125Updated last year