m-beau / NeuroPyxels
NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a pythonist who really did not want to transition to MATLAB to work with Neuropixels: it features a suite of core utility functions for loading, processing and plotting Neuropixels data.
☆117Updated last month
Alternatives and similar repositories for NeuroPyxels:
Users that are interested in NeuroPyxels are comparing it to the libraries listed below
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆73Updated 5 months ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆58Updated last week
- A curated list of awesome Neuropixels resources.☆92Updated last month
- WIP: Python port of Kilosort2☆50Updated last year
- Utilities for managing Neuropixel datasets and Kilosort results☆46Updated last year
- cortex lab code for electrophysiology☆79Updated last year
- Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days☆53Updated 2 weeks ago
- CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation☆21Updated 2 weeks ago
- Archived code for reading data saved by the Open Ephys GUI☆59Updated last year
- Python code implementing the ZETA-test☆25Updated 6 months ago
- A course given at the 2017 Canadian Neuroscience meeting, Neural Signal Analysis Satellite.☆14Updated 6 years ago
- Tutorials for using SpikeInterface on extracellular datasets.☆61Updated last year
- "Approaches to Study Neural Circuits" course☆65Updated 3 months ago
- Python package to handle probe layout, geometry and wiring to device.☆56Updated this week
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆112Updated 6 months ago
- pyqt5 dependent applications for IBL sessions☆26Updated 2 weeks ago
- Package for automatic post-processing and merging of multiple spike-sorting analyses.☆25Updated 9 months ago
- ☆15Updated 10 months ago
- SpikeGLX recording system GUI [Neuropixels NI]☆85Updated 2 weeks ago
- Code for internal lab sharing - polishing has started but is by no means complete☆125Updated last year
- pynapple collaborative data analysis (high level python scripts)☆37Updated 11 months ago
- Registration of cells across sessions.☆73Updated 6 months ago
- Plugins for Phy2☆16Updated last month
- A gui for browsing joint calcium imaging + behavioral data.☆51Updated last month
- ☆14Updated last year
- Histology processing☆65Updated this week
- Matlab code for interacting with the Open Ephys GUI☆14Updated 5 months ago
- GUI for spikeinterface objects☆33Updated 3 weeks ago
- ☆52Updated 6 months ago
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆33Updated 2 weeks ago