☆15Feb 17, 2026Updated 2 weeks ago
Alternatives and similar repositories for PhytoPipe
Users that are interested in PhytoPipe are comparing it to the libraries listed below
Sorting:
- ☆12Jan 25, 2023Updated 3 years ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated last week
- HiFi-SR is a Python-based pipeline for the detection of plant mitochondrial structural rearrangements based on the mapping of PacBio high…☆10Apr 15, 2025Updated 10 months ago
- Gene Family Annotation Workflow☆11Mar 26, 2024Updated last year
- A richly featured desktop platform for data analysis of bioinformatics. Especially, for quick sequence annotation and mutation analysis o…☆34Nov 6, 2024Updated last year
- MegaSSR is a robust online server that identifies Simple Sequence Repeats (SSR) and enables the design of SSR markers in high-throughput …☆11Nov 25, 2024Updated last year
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated last year
- ☆14Oct 27, 2025Updated 4 months ago
- Easy353 is a tool for recovering Angiosperms353 gene set.☆11Jul 29, 2025Updated 7 months ago
- Strand and WGD aware syntenic gene identification☆15Oct 16, 2025Updated 4 months ago
- An ontology database for crops' traits with their variables☆21Apr 9, 2025Updated 11 months ago
- detectRuns: a R Package for Runs of Homozygosity and Runs of Heterozygosity☆12May 25, 2023Updated 2 years ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated last year
- ☆13Nov 13, 2023Updated 2 years ago
- ☆16Jan 14, 2026Updated last month
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Sep 22, 2025Updated 5 months ago
- genomic variant frequency estimation☆11Sep 7, 2025Updated 6 months ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 9 months ago
- ☆10May 22, 2025Updated 9 months ago
- Stripdown of the mean.io stack for the ngFantasyFootball application☆112Apr 30, 2014Updated 11 years ago
- GeneMiner: a tool for extracting phylogenetic markers from next-generation sequencing data☆12Feb 22, 2024Updated 2 years ago
- Calculate the dn/ds (also pn and ps) value of cds☆13Jul 11, 2020Updated 5 years ago
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆11Jan 20, 2026Updated last month
- Scripts, HMMs and search databases for identifying and classifying viral RdRp sequences☆11Jul 4, 2025Updated 8 months ago
- This is a phylogeny workflow for batch submission to HPC cluster built with Slurm queue manager☆10Mar 19, 2024Updated last year
- 基于改进YOLOv5的猕猴桃叶病害检测系统（完整源码＆数据集＆视频教程）☆15Dec 3, 2023Updated 2 years ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Jan 12, 2024Updated 2 years ago
- ☆21Aug 1, 2025Updated 7 months ago
- ☆16Nov 19, 2025Updated 3 months ago
- Phylogenetic tools for Eco-phylogenetics☆14Oct 10, 2024Updated last year
- LaTeX Template for Fudan University School of Computer Science 2024☆11May 21, 2024Updated last year
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 2 months ago
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10Jan 27, 2026Updated last month
- ☆16Jun 9, 2025Updated 9 months ago
- Code repository for the Global Ant Genomics Alliance☆16Jun 16, 2025Updated 8 months ago
- ☆13Dec 4, 2025Updated 3 months ago
- Tutorial for using MCMCTree as implemented by Brown Lab at SIUC. For divergence time estimation on UCE datasets, for dendrobatid frogs.☆10Jun 19, 2020Updated 5 years ago
- Module and script to remove contamination in assembled genomes before submission to ncbi☆14Jul 28, 2025Updated 7 months ago
- A set of scripts for the assembly of chloroplast genomes out of whole-genome sequencing reads☆12May 2, 2019Updated 6 years ago