robert-haas / awesome-biomedical-knowledge-graphsLinks
A curated list of biomedical knowledge graphs and of resources for their construction.
☆51Updated 9 months ago
Alternatives and similar repositories for awesome-biomedical-knowledge-graphs
Users that are interested in awesome-biomedical-knowledge-graphs are comparing it to the libraries listed below
Sorting:
- ClinVec: Unified Embeddings of Clinical Codes Enable Knowledge-Grounded AI in Medicine☆61Updated 3 weeks ago
- Precision Medicine Knowledge Graph (PrimeKG)☆585Updated last year
- SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases☆61Updated 2 weeks ago
- ☆38Updated 3 months ago
- Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported f…☆497Updated 2 years ago
- The Clinical Trials Knowledge Graph☆57Updated 2 years ago
- Code for MedCPT, a model for zero-shot biomedical information retrieval.☆190Updated last year
- TxGNN: Zero-shot prediction of therapeutic use with geometric deep learning and clinician centered design☆213Updated last year
- ☆18Updated 10 months ago
- A collection of research papers, datasets and software related to knowledge graphs for drug discovery. Accompanies the paper "A review of…☆231Updated last month
- Code and data for TrialGPT.☆115Updated 5 months ago
- Build PharMeBINet from different sources.☆18Updated this week
- Backend library for conversational AI in biomedicine☆169Updated this week
- AIONER☆56Updated 11 months ago
- PyTrial: A Comprehensive Platform for Artificial Intelligence for Drug Development☆109Updated last year
- ☆26Updated last year
- [ISMB '24] Self-BioRAG: Improving Medical Reasoning through Retrieval and Self-Reflection with Retrieval-Augmented Large Language Models☆63Updated last year
- Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆44Updated 2 weeks ago
- A unifying framework for biomedical research knowledge graphs☆258Updated this week
- A specialized LLM for study search, study screening, and data extraction from medical literature.☆11Updated 4 months ago
- A curated list of awesome healthcare taxonomies and knowledge graphs.☆71Updated last year
- ToolUniverse is a collection of biomedical tools designed for AI agents☆169Updated this week
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆40Updated last year
- Code for CTO: A Large Clinical Trial Outcome and QA Dataset☆24Updated 3 months ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆63Updated last month
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆192Updated last year
- Expert-Curated Oncology Reports to Advance Language Model Inference☆29Updated last year
- Example code and data samples for "An experimentally validated approach to automated biological evidence generation in drug discovery usi…☆11Updated last year
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆74Updated last week
- PlaNet: Predicting population response to drugs via clinical knowledge graph☆30Updated 4 months ago