robert-haas / awesome-biomedical-knowledge-graphsLinks
A curated list of biomedical knowledge graphs and of resources for their construction.
☆53Updated 9 months ago
Alternatives and similar repositories for awesome-biomedical-knowledge-graphs
Users that are interested in awesome-biomedical-knowledge-graphs are comparing it to the libraries listed below
Sorting:
- Precision Medicine Knowledge Graph (PrimeKG)☆594Updated last year
- ClinVec: Unified Embeddings of Clinical Codes Enable Knowledge-Grounded AI in Medicine☆64Updated this week
- Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported f…☆505Updated 2 years ago
- ☆41Updated 3 months ago
- SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases☆69Updated last month
- TxGNN: Zero-shot prediction of therapeutic use with geometric deep learning and clinician centered design☆217Updated last year
- Code for MedCPT, a model for zero-shot biomedical information retrieval.☆197Updated last year
- PyTrial: A Comprehensive Platform for Artificial Intelligence for Drug Development☆110Updated last year
- ☆19Updated 11 months ago
- The Clinical Trials Knowledge Graph☆57Updated 2 years ago
- AIONER☆57Updated last year
- Code and data for TrialGPT.☆118Updated 6 months ago
- A collection of research papers, datasets and software related to knowledge graphs for drug discovery. Accompanies the paper "A review of…☆234Updated 2 months ago
- ToolUniverse is a collection of biomedical tools designed for AI agents☆190Updated 3 weeks ago
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆80Updated last month
- Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆44Updated last week
- benchmark dataset and Deep learning method (Hierarchical Interaction Network, HINT) for clinical trial approval probability prediction, p…☆126Updated last month
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆63Updated last month
- Backend library for conversational AI in biomedicine☆171Updated 3 weeks ago
- Code and data for Cell-o1.☆19Updated 3 weeks ago
- [ISMB '24] Self-BioRAG: Improving Medical Reasoning through Retrieval and Self-Reflection with Retrieval-Augmented Large Language Models☆63Updated last year
- A unifying framework for biomedical research knowledge graphs☆259Updated this week
- Build PharMeBINet from different sources.☆19Updated last week
- Code for CTO: A Large Clinical Trial Outcome and QA Dataset☆25Updated 4 months ago
- Code for paper "A deep learning framework for drug repurposing via emulating clinical trials on real world patient data" (Accepted to Nat…☆97Updated 3 years ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆40Updated last year
- ☆27Updated last year
- ☆64Updated 3 years ago
- Expert-Curated Oncology Reports to Advance Language Model Inference☆29Updated last year
- A specialized LLM for study search, study screening, and data extraction from medical literature.☆12Updated 4 months ago