A curated list of biomedical knowledge graphs and of resources for their construction.
☆75Oct 17, 2024Updated last year
Alternatives and similar repositories for awesome-biomedical-knowledge-graphs
Users that are interested in awesome-biomedical-knowledge-graphs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering,…☆29Mar 16, 2026Updated 3 months ago
- Precision Medicine Knowledge Graph (PrimeKG)☆788Jun 30, 2026Updated last week
- Build PharMeBINet from different sources.☆21Jan 15, 2026Updated 5 months ago
- A curated list of awesome healthcare taxonomies and knowledge graphs.☆79Mar 24, 2024Updated 2 years ago
- This is the official repository for our paper "Doctor-R1: Mastering Clinical Inquiry with Experiential Agentic Reinforcement Learning" pu…☆47Apr 11, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- The Official Repo for Paper: Aligning Clinical Needs and AI Capabilities: A Survey on LLMs for Medical Reasoning☆24Apr 7, 2026Updated 3 months ago
- ☆25Feb 6, 2023Updated 3 years ago
- Simulate patients with rare genetic conditions☆24Jul 28, 2023Updated 2 years ago
- ☆33Nov 30, 2023Updated 2 years ago
- biochem4j: integrated and extensible biochemical knowledge through graph databases☆12Apr 12, 2018Updated 8 years ago
- Code for the paper "KG-Adapter: Enabling Knowledge Graph Integration in Large Language Models through Parameter-Efficient Fine-Tuning"☆15Oct 21, 2025Updated 8 months ago
- Web tool to assess FAIR principles and promote their implementation☆29Jun 8, 2026Updated last month
- Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported f…☆599Sep 11, 2025Updated 9 months ago
- This project hosts scripts to generate flat tables derived from OpenMRS data used for reporting purposes.☆11Jun 17, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Official implemention of the paper High-Resolution and Precise Counterfactual Medical Image Generation using Language-guided Stable Diffu…☆24Jul 8, 2025Updated last year
- [CVPR 2025] Custom Open CLIP repo to train biomedical CLIP models☆38Mar 23, 2025Updated last year
- ☆59Nov 15, 2020Updated 5 years ago
- ☆17Mar 2, 2019Updated 7 years ago
- MPEK is a universal tool for predicting enzyme turnover number (kcat) and Michaelis-Menten constant (Km) for all types of enzymes. BTW, a…☆30Aug 21, 2024Updated last year
- Synthetic lethality (SL) is a promising gold mine for the discovery of anti-cancer drug targets. KG4SL is the first graph neural network …☆34Aug 1, 2023Updated 2 years ago
- An automated workflow to create disease-specific Knowledge Graphs☆25Mar 24, 2026Updated 3 months ago
- KGX is a Python library for exchanging Knowledge Graphs☆179Jun 17, 2026Updated 3 weeks ago
- Kim, J., Evans, J., & Schein, A. (2025). Linear Representations of Political Perspective Emerge in Large Language Models. ICLR.☆25Mar 27, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- GOAT: efficient and robust identification of gene set enrichment☆14Jan 24, 2026Updated 5 months ago
- Course material for CB2030☆16Jun 23, 2026Updated 2 weeks ago
- Graph Neural Networks with Multiple Prior Knowledge for Multi-Omics Data Analysis☆11May 1, 2023Updated 3 years ago
- A stitching platform for InXight☆15Jun 12, 2026Updated 3 weeks ago
- The Clinical Trials Knowledge Graph☆69Mar 9, 2023Updated 3 years ago
- Zero-shot clinical trial matching with LLMs☆19Mar 1, 2025Updated last year
- Repository for PURE: Turning Polysemantic Neurons Into Pure Features by Identifying Relevant Circuits, accepted at CVPR 2024 XAI4CV Works…☆20May 29, 2024Updated 2 years ago
- 📊 An R package of RNA-seq workflow☆16May 4, 2022Updated 4 years ago
- MeSH Enrichment and Semantic analyses☆12Jun 30, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Knowledge-Graph-UI (KG-UI) is an open-source web-based user interface built for KGs stored in Neo4j. The UI features Cypher queries for v…☆22Feb 18, 2026Updated 4 months ago
- QUANtification by Distillation for ENhanced Signals with Error Regulation☆10Aug 20, 2022Updated 3 years ago
- Code for MedCPT, a model for zero-shot biomedical information retrieval.☆266Mar 24, 2024Updated 2 years ago
- VcfExplorer regroups several programs which principal aims are to map DNA and RNAseq data onto reference genome sequence, perform variant…☆16Apr 15, 2026Updated 2 months ago
- Python implementation to fit Structural Equation Models☆11Jun 22, 2023Updated 3 years ago
- Source code for the paper 'Complex Hyperbolic Knowledge Graph Embeddings with Fast Fourier Transform'.☆12Nov 9, 2022Updated 3 years ago
- Post Translational Modification (PTM) Significance Analysis in shotgun mass spectrometry-based proteomic experiments☆14Apr 29, 2026Updated 2 months ago