A curated list of biomedical knowledge graphs and of resources for their construction.
☆74Oct 17, 2024Updated last year
Alternatives and similar repositories for awesome-biomedical-knowledge-graphs
Users that are interested in awesome-biomedical-knowledge-graphs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Precision Medicine Knowledge Graph (PrimeKG)☆750May 27, 2024Updated last year
- Build PharMeBINet from different sources.☆21Jan 15, 2026Updated 3 months ago
- KGARevion: AI Agent for Knowledge-Intensive Biomedical QA☆48Mar 4, 2025Updated last year
- A curated list of awesome healthcare taxonomies and knowledge graphs.☆79Mar 24, 2024Updated 2 years ago
- The Official Repo for Paper: Aligning Clinical Needs and AI Capabilities: A Survey on LLMs for Medical Reasoning☆22Apr 7, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Amazon Neptune CSV to RDF Converter is a tool for Amazon Neptune that converts property graphs stored as comma separated values into RDF …☆33Apr 11, 2023Updated 3 years ago
- Simulate patients with rare genetic conditions☆24Jul 28, 2023Updated 2 years ago
- Codebase for BioPathNet to predict links in biomedical knowledge graphs☆38Feb 19, 2026Updated 2 months ago
- ☆33Nov 30, 2023Updated 2 years ago
- biochem4j: integrated and extensible biochemical knowledge through graph databases☆12Apr 12, 2018Updated 8 years ago
- [MICCAI 2023] Official implementation of our MICCAI 2023 paper "Pick the Best Pre-trained Model: Towards Transferability Estimation for M…☆13Jul 27, 2023Updated 2 years ago
- Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported f…☆592Sep 11, 2025Updated 7 months ago
- [CVPR 2025] Custom Open CLIP repo to train biomedical CLIP models☆37Mar 23, 2025Updated last year
- [ACL 2025] Adaptive Retrieval without Self-Knowledge? Bringing Uncertainty Back Home☆18May 17, 2025Updated 11 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Official code for the paper "Joint Bayesian Inference of Graphical Structure and Parameters with a Single Generative Flow Network"☆16Aug 9, 2023Updated 2 years ago
- ☆17Mar 2, 2019Updated 7 years ago
- KGX is a Python library for exchanging Knowledge Graphs☆140Apr 30, 2026Updated last week
- Synthetic lethality (SL) is a promising gold mine for the discovery of anti-cancer drug targets. KG4SL is the first graph neural network …☆33Aug 1, 2023Updated 2 years ago
- An automated workflow to create disease-specific Knowledge Graphs☆24Mar 24, 2026Updated last month
- UAB Research Computing Documentation☆24Updated this week
- Kim, J., Evans, J., & Schein, A. (2025). Linear Representations of Political Perspective Emerge in Large Language Models. ICLR.☆25Mar 27, 2025Updated last year
- GOAT: efficient and robust identification of gene set enrichment☆14Jan 24, 2026Updated 3 months ago
- ☆10Apr 26, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Course material for CB2030☆15Mar 13, 2026Updated last month
- Graph Neural Networks with Multiple Prior Knowledge for Multi-Omics Data Analysis☆11May 1, 2023Updated 3 years ago
- A stitching platform for InXight☆15Mar 28, 2025Updated last year
- Zero-shot clinical trial matching with LLMs☆17Mar 1, 2025Updated last year
- Repository for PURE: Turning Polysemantic Neurons Into Pure Features by Identifying Relevant Circuits, accepted at CVPR 2024 XAI4CV Works…☆20May 29, 2024Updated last year
- 📊 An R package of RNA-seq workflow☆16May 4, 2022Updated 4 years ago
- MeSH Enrichment and Semantic analyses☆12Apr 29, 2026Updated last week
- Knowledge-Graph-UI (KG-UI) is an open-source web-based user interface built for KGs stored in Neo4j. The UI features Cypher queries for v…☆21Feb 18, 2026Updated 2 months ago
- Code for MedCPT, a model for zero-shot biomedical information retrieval.☆256Mar 24, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- QUANtification by Distillation for ENhanced Signals with Error Regulation☆10Aug 20, 2022Updated 3 years ago
- Source code for the paper 'Complex Hyperbolic Knowledge Graph Embeddings with Fast Fourier Transform'.☆12Nov 9, 2022Updated 3 years ago
- H. Bengtsson, A Unifying Framework for Parallel and Distributed Processing in R using Futures, The R Journal, 10.32614/RJ-2021-048, 2021☆10Jan 24, 2026Updated 3 months ago
- Post Translational Modification (PTM) Significance Analysis in shotgun mass spectrometry-based proteomic experiments☆14Apr 29, 2026Updated last week
- TypeDB Bio: Biomedical Knowledge Graph☆88Jun 2, 2025Updated 11 months ago
- Multidocument Summarization for Literature Review Shared Task 2022☆30Oct 16, 2022Updated 3 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆53Updated this week