MNoichl / UMAP-examples-mammoth-Links
The mammoth-dataset, a commonly used example for dimensionality reduction techniques.
☆35Updated 5 years ago
Alternatives and similar repositories for UMAP-examples-mammoth-
Users that are interested in UMAP-examples-mammoth- are comparing it to the libraries listed below
Sorting:
- Fast embedding ot multidimensional datasets, great for cytometry data☆26Updated 4 months ago
- Testing if UMAP/tSNE overfit their intrinsic dimensionality☆15Updated last year
- Attraction-Repulsion Spectrum in Neighbor Embeddings☆30Updated 2 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- Probabilistic Graphical Models in Python3.☆24Updated this week
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated 10 months ago
- A spectral method for assessing and combining multiple data visualizations☆50Updated last year
- ☆16Updated 3 years ago
- Density-preserving data visualization tools den-SNE and densMAP☆111Updated 4 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆38Updated 2 years ago
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆7Updated 7 years ago
- External repo for the EFAAR benchmarking paper☆19Updated this week
- All code necessary for reconstructing Bonsai-trees on high-dimensional data and visualizing them in Bonsai-scout☆75Updated last week
- CellBox: Interpretable Machine Learning for Perturbation Biology☆54Updated last year
- ☆23Updated 3 years ago
- ugtm: a Python package for Generative Topographic Mapping☆51Updated 4 years ago
- The starter repository for submissions to the GeneDisco challenge for optimized experimental design in genetic perturbation experiments.☆24Updated 3 years ago
- pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…☆21Updated 2 months ago
- C++ Accelerated Python Diffusion Maps Library☆23Updated 6 years ago
- Jupyter notebooks and Python scripts associated with experiments and analyses presented in "Dynamic visualization of high-dimensional dat…☆26Updated 2 years ago
- Systematically learn and evaluate manifolds from high-dimensional data☆98Updated last year
- Here I explain the math behind UMAP and show how to program it from scratch in Python☆38Updated 4 years ago
- A Python toolkit for setting up benchmarking dataset using biomedical networks☆22Updated last week
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆28Updated 2 years ago
- Here we address the global structure preservation by tSNE and UMAP☆48Updated 5 years ago
- The art of using t-SNE for single-cell transcriptomics☆125Updated 6 months ago
- A package for making MuE observation models in Edward2.☆13Updated 3 years ago
- Parallel opt-SNE implementation with Python wrapper☆37Updated 2 years ago
- Starter repository for submissions to the CausalBench challenge for gene-gene graph inference from genetic perturbation experiments.☆30Updated 2 years ago
- ☆10Updated last year