Alternatives and similar repositories for UMAP-examples-mammoth-:

Users that are interested in UMAP-examples-mammoth- are comparing it to the libraries listed below

• hhcho / densvis
  Density-preserving data visualization tools den-SNE and densMAP
  ☆110Updated 3 years ago
• pachterlab / CBP_2021
  ☆16Updated 3 years ago
• scottyler89 / umap_tsne_experiment
  Testing if UMAP/tSNE overfit their intrinsic dimensionality
  ☆15Updated last year
• rongstat / meta-visualization
  A spectral method for assessing and combining multiple data visualizations
  ☆49Updated last year
• exaexa / EmbedSOM
  Fast embedding ot multidimensional datasets, great for cytometry data
  ☆26Updated 2 months ago
• sanderlab / CellBox
  CellBox: Interpretable Machine Learning for Perturbation Biology
  ☆53Updated last year
• jertubiana / PGM
  Probabilistic Graphical Models in Python3.
  ☆24Updated 2 years ago
• welch-lab / MichiGAN
  Learning disentangled representations of single-cell data for high-quality generation
  ☆16Updated last year
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆60Updated 4 years ago
• davisidarta / topometry
  Systematically learn and evaluate manifolds from high-dimensional data
  ☆97Updated last year
• hagax8 / ugtm
  ugtm: a Python package for Generative Topographic Mapping
  ☆51Updated 4 years ago
• berenslab / ne-spectrum
  Attraction-Repulsion Spectrum in Neighbor Embeddings
  ☆30Updated 2 years ago
• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆70Updated 9 months ago
• RabadanLab / scTDA
  An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data
  ☆7Updated 7 years ago
• adalmia96 / umap-mnn
  ☆23Updated 3 years ago
• NikolayOskolkov / tSNE_vs_UMAP_GlobalStructure
  Here we address the global structure preservation by tSNE and UMAP
  ☆48Updated 5 years ago
• KrishnaswamyLab / DiffusionEMD
  Code corresponding to the paper Diffusion Earth Mover's Distance and Distribution Embeddings
  ☆36Updated 4 months ago
• msmdev / pyGPCCA
  pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…
  ☆21Updated 3 weeks ago
• ChengF-Lab / GPSnet
  ☆34Updated 6 years ago
• KrishnaswamyLab / AAnet
  Archetypal Analysis network (AAnet)
  ☆33Updated 2 months ago
• debbiemarkslab / MuE
  A package for making MuE observation models in Edward2.
  ☆13Updated 3 years ago
• sunericd / dynamicviz
  ☆61Updated 3 months ago
• cantinilab / OT-scOmics
  This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…
  ☆38Updated 2 years ago
• hsidky / dmaps
  C++ Accelerated Python Diffusion Maps Library
  ☆23Updated 6 years ago
• Genentech / sVAE
  ☆60Updated last year
• broadinstitute / lincs-cell-painting
  Processed Cell Painting Data for the LINCS Drug Repurposing Project
  ☆27Updated 2 years ago
• AstraZeneca / skywalkR
  code for Gogleva et al manuscript
  ☆45Updated 2 years ago
• BorgwardtLab / maldi_amr
  Code for the paper "Antimicrobial resistance prediction in clinical isolates through machine learning on MALDI-TOF mass spectra"
  ☆41Updated 2 years ago
• omiq-ai / Multicore-opt-SNE
  Parallel opt-SNE implementation with Python wrapper
  ☆37Updated 2 years ago
• causalbench / causalbench-starter
  Starter repository for submissions to the CausalBench challenge for gene-gene graph inference from genetic perturbation experiments.
  ☆29Updated last year