Alternatives and similar repositories for diffusion-maps

Users that are interested in diffusion-maps are comparing it to the libraries listed below

• DiffusionMapsAcademics / pyDiffMap
  Library for diffusion maps
  ☆46Updated 3 years ago
• lujonathanh / BETS
  Bootstrap Elastic net regression from Time Series is a vector-autoregressive approach to causal inference from gene expression time serie…
  ☆20Updated 2 years ago
• msmdev / pyGPCCA
  pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…
  ☆21Updated last month
• ManchesterBioinference / BranchedGP
  Branching Gaussian process
  ☆30Updated 2 years ago
• hsidky / dmaps
  C++ Accelerated Python Diffusion Maps Library
  ☆23Updated 6 years ago
• SheffieldML / GPclust
  Collapsed Variational Bayes
  ☆70Updated 5 years ago
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆60Updated 4 years ago
• redst4r / pyDiffusionMaps
  Diffusion maps for python
  ☆12Updated 5 years ago
• MathieuCarriere / perslocsig
  Local signatures for 3D shapes with persistent homology
  ☆13Updated 5 years ago
• Hoosier-Clusters / clusim
  An extended package for clustering similarity
  ☆65Updated 4 months ago
• fabian-sp / GGLasso
  A Python package for General Graphical Lasso computation
  ☆35Updated 2 months ago
• lilab-bcb / nmf-torch
  ☆11Updated 2 weeks ago
• lizliz / teaspoon
  ☆44Updated 2 years ago
• eltrompetero / coniii
  Convenient Interface to Inverse Ising (ConIII)
  ☆21Updated last year
• hagax8 / ugtm
  ugtm: a Python package for Generative Topographic Mapping
  ☆51Updated 4 years ago
• bhmm / bhmm
  Bayesian hidden Markov models toolkit
  ☆47Updated 4 years ago
• scikit-tda / tadasets
  Synthetic data sets apt for Topological Data Analysis
  ☆35Updated last month
• BorgwardtLab / JointMDS
  Official implementation of Joint Multidimensional Scaling
  ☆22Updated last year
• eth-cscs / abcpy
  ABCpy package
  ☆114Updated last year
• slinderman / pypolyagamma
  Fast C code for sampling Polya-gamma random variates. Builds on Jesse Windle's BayesLogit library.
  ☆82Updated 5 years ago
• rcmorehead / simpleabc
  A Python package for Approximate Bayesian Computation
  ☆36Updated 8 years ago
• NikolayOskolkov / HowUMAPWorks
  Here I explain the math behind UMAP and show how to program it from scratch in Python
  ☆38Updated 4 years ago
• andrewcharlesjones / pcpca
  Probabilistic contrastive principal component analysis (PCPCA)
  ☆24Updated 3 years ago
• liuyxpp / mpltex
  A python package for producing publication quality images using matplotlib.
  ☆100Updated 4 years ago
• NikolayOskolkov / tSNE_vs_UMAP_GlobalStructure
  Here we address the global structure preservation by tSNE and UMAP
  ☆48Updated 5 years ago
• KrishnaswamyLab / DiffusionEMD
  Code corresponding to the paper Diffusion Earth Mover's Distance and Distribution Embeddings
  ☆36Updated 5 months ago
• KrishnaswamyLab / TrajectoryNet
  TrajectoryNet: A Dynamic Optimal Transport Network for Modeling Cellular Dynamics
  ☆114Updated 8 months ago
• Jinke-Liu / Distance-of-distance-tSNE
  ☆10Updated last year
• davisidarta / topometry
  Systematically learn and evaluate manifolds from high-dimensional data
  ☆97Updated last year
• Leo-Simpson / c-lasso
  c-lasso: a Python package for constrained sparse regression and classification
  ☆32Updated 4 years ago