Alternatives and similar repositories for diffusion-maps

Users that are interested in diffusion-maps are comparing it to the libraries listed below

• DiffusionMapsAcademics / pyDiffMap
  Library for diffusion maps
  ☆45Updated 3 years ago
• fabian-sp / GGLasso
  A Python package for General Graphical Lasso computation
  ☆36Updated 6 months ago
• SheffieldML / GPclust
  Collapsed Variational Bayes
  ☆72Updated 5 years ago
• hsidky / dmaps
  C++ Accelerated Python Diffusion Maps Library
  ☆23Updated 7 years ago
• msmdev / pyGPCCA
  pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…
  ☆21Updated 4 months ago
• redst4r / pyDiffusionMaps
  Diffusion maps for python
  ☆12Updated 5 years ago
• lujonathanh / BETS
  Bootstrap Elastic net regression from Time Series is a vector-autoregressive approach to causal inference from gene expression time serie…
  ☆20Updated 2 years ago
• eth-cscs / abcpy
  ABCpy package
  ☆115Updated last year
• KrishnaswamyLab / DiffusionEMD
  Code corresponding to the paper Diffusion Earth Mover's Distance and Distribution Embeddings
  ☆38Updated 9 months ago
• eltrompetero / coniii
  Convenient Interface to Inverse Ising (ConIII)
  ☆21Updated last year
• hagax8 / ugtm
  ugtm: a Python package for Generative Topographic Mapping
  ☆51Updated 4 years ago
• theochem / procrustes
  Python library for finding the optimal transformation(s) that makes two matrices as close as possible to each other.
  ☆122Updated 2 months ago
• lilab-bcb / nmf-torch
  ☆11Updated 3 months ago
• lawrennd / old_talks
  Talks from Neil Lawrence
  ☆54Updated last year
• mstrazar / iONMF
  Integrative orthogonal non-negative matrix factorization
  ☆31Updated 5 years ago
• stat-ml / GeoMLE
  This repo contains code for GeoMLE intrinsic dimension estimation algorithm
  ☆20Updated 5 years ago
• tlubitz / parameter_balancing
  Software tool for metabolic modelling in Systems Biology
  ☆10Updated 4 years ago
• GGiecold-zz / Cluster_Ensembles
  A package for combining multiple partitions into a consolidated clustering. The combinatorial optimization problem of obtaining such a co…
  ☆74Updated 3 years ago
• kasparmartens / NeuralDecomposition
  PyTorch implementation of the paper "Neural Decomposition: Functional ANOVA with Variational Autoencoders"
  ☆25Updated 5 years ago
• msmbuilder / vde
  Variational Autoencoder for Dimensionality Reduction of Time-Series
  ☆188Updated 3 years ago
• skggm / skggm
  Scikit-learn compatible estimation of general graphical models
  ☆247Updated 2 months ago
• Leo-Simpson / c-lasso
  c-lasso: a Python package for constrained sparse regression and classification
  ☆32Updated 4 years ago
• abidlabs / contrastive
  Contrastive PCA
  ☆220Updated 10 months ago
• jakevdp / wpca
  Weighted Principal Component Analysis (PCA) in Python
  ☆156Updated 7 years ago
• snakers4 / playing_with_vae
  Comparing FC VAE / FCN VAE / PCA / UMAP on MNIST / FMNIST
  ☆64Updated 7 years ago
• KrishnaswamyLab / TrajectoryNet
  TrajectoryNet: A Dynamic Optimal Transport Network for Modeling Cellular Dynamics
  ☆123Updated last year
• NikolayOskolkov / tSNE_vs_UMAP_GlobalStructure
  Here we address the global structure preservation by tSNE and UMAP
  ☆48Updated 5 years ago
• NikolayOskolkov / HowUMAPWorks
  Here I explain the math behind UMAP and show how to program it from scratch in Python
  ☆39Updated 4 years ago
• msmbuilder / msmbuilder
  Statistical models for biomolecular dynamics
  ☆158Updated 4 years ago
• ur-whitelab / maxent
  MaxEnt code for fitting simulation outcomes/statistical models to observations
  ☆16Updated 3 years ago