jmbr / diffusion-maps
Fast computation of diffusion maps and geometric harmonics in Python. Moved to https://git.sr.ht/~jmbr/diffusion-maps
☆41Updated 3 years ago
Alternatives and similar repositories for diffusion-maps:
Users that are interested in diffusion-maps are comparing it to the libraries listed below
- Library for diffusion maps☆46Updated 3 years ago
- C++ Accelerated Python Diffusion Maps Library☆23Updated 6 years ago
- Diffusion maps for python☆12Updated 4 years ago
- Branching Gaussian process☆28Updated last year
- pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…☆21Updated last month
- generalized principal component analysis (GLM-PCA) implemented in python☆58Updated 3 years ago
- ABCpy package☆113Updated 8 months ago
- Collapsed Variational Bayes☆68Updated 5 years ago
- PyTorch implementation of the paper "Neural Decomposition: Functional ANOVA with Variational Autoencoders"☆25Updated 4 years ago
- A Python package for General Graphical Lasso computation☆31Updated last month
- Randomized Dimension Reduction Library☆116Updated 3 years ago
- Density estimation likelihood-free inference. No longer actively developed see https://github.com/mackelab/sbi instead☆73Updated 4 years ago
- ☆10Updated 3 years ago
- Fast and flexible code for solving the inverse Ising/Potts inference problem☆26Updated last year
- Convenient Interface to Inverse Ising (ConIII)☆21Updated last year
- Software tool for metabolic modelling in Systems Biology☆10Updated 4 years ago
- Modeling toolkit for biochemical simulation☆73Updated this week
- ☆16Updated 3 years ago
- An extended package for clustering similarity☆64Updated 2 weeks ago
- ugtm: a Python package for Generative Topographic Mapping☆49Updated 3 years ago
- Statistical models for biomolecular dynamics☆155Updated 4 years ago
- Initialization is critical for preserving global data structure in both t-SNE and UMAP☆22Updated 3 years ago
- Official implementation of Joint Multidimensional Scaling☆22Updated last year
- Here we address the global structure preservation by tSNE and UMAP☆47Updated 4 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆38Updated last year
- Code corresponding to the paper Diffusion Earth Mover's Distance and Distribution Embeddings☆35Updated 2 months ago
- Probabilistic contrastive principal component analysis (PCPCA)☆24Updated 3 years ago
- Piece-wise Linear curves converted to point-clouds, analysed with Persistent Homology, represented as HyperGraphs.☆15Updated 3 weeks ago
- Sequential Neural Likelihood☆39Updated 5 years ago
- ☆10Updated 9 months ago