Alternatives and similar repositories for diffusion-maps

Users that are interested in diffusion-maps are comparing it to the libraries listed below

• DiffusionMapsAcademics / pyDiffMap
  Library for diffusion maps
  ☆46Updated 3 years ago
• eth-cscs / abcpy
  ABCpy package
  ☆116Updated last year
• redst4r / pyDiffusionMaps
  Diffusion maps for python
  ☆12Updated 5 years ago
• msmdev / pyGPCCA
  pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…
  ☆25Updated 8 months ago
• hsidky / dmaps
  C++ Accelerated Python Diffusion Maps Library
  ☆23Updated 7 years ago
• SheffieldML / GPclust
  Collapsed Variational Bayes
  ☆72Updated 6 years ago
• hagax8 / ugtm
  ugtm: a Python package for Generative Topographic Mapping
  ☆51Updated 4 years ago
• KrishnaswamyLab / DiffusionEMD
  Code corresponding to the paper Diffusion Earth Mover's Distance and Distribution Embeddings
  ☆38Updated last year
• fabian-sp / GGLasso
  A Python package for General Graphical Lasso computation
  ☆39Updated 9 months ago
• lujonathanh / BETS
  Bootstrap Elastic net regression from Time Series is a vector-autoregressive approach to causal inference from gene expression time serie…
  ☆20Updated 2 years ago
• lilab-bcb / nmf-torch
  ☆11Updated 6 months ago
• erichson / ristretto
  Randomized Dimension Reduction Library
  ☆117Updated 4 years ago
• msmbuilder / vde
  Variational Autoencoder for Dimensionality Reduction of Time-Series
  ☆189Updated 3 years ago
• sissa-data-science / DADApy
  Distance-based Analysis of DAta-manifolds in python
  ☆137Updated last week
• theochem / procrustes
  Python library for finding the optimal transformation(s) that makes two matrices as close as possible to each other.
  ☆127Updated 6 months ago
• eltrompetero / coniii
  Convenient Interface to Inverse Ising (ConIII)
  ☆21Updated 2 months ago
• crisbodnar / dgm
  Deep Graph Mapper: Seeing Graphs through the Neural Lens
  ☆58Updated 2 years ago
• msmbuilder / msmbuilder
  Statistical models for biomolecular dynamics
  ☆160Updated 4 years ago
• andrewcharlesjones / pcpca
  Probabilistic contrastive principal component analysis (PCPCA)
  ☆24Updated 4 years ago
• tlubitz / parameter_balancing
  Software tool for metabolic modelling in Systems Biology
  ☆10Updated 4 years ago
• mstrazar / iONMF
  Integrative orthogonal non-negative matrix factorization
  ☆32Updated 6 years ago
• BorgwardtLab / JointMDS
  Official implementation of Joint Multidimensional Scaling
  ☆23Updated 2 years ago
• Hoosier-Clusters / clusim
  An extended package for clustering similarity
  ☆71Updated last month
• mackelab / delfi
  Density estimation likelihood-free inference. No longer actively developed see https://github.com/mackelab/sbi instead
  ☆73Updated 5 years ago
• LuisScoccola / persistable
  density-based clustering for exploratory data analysis based on multi-parameter persistence
  ☆42Updated 4 months ago
• ICB-DCM / pyABC
  distributed, likelihood-free inference
  ☆217Updated 2 weeks ago
• NikolayOskolkov / tSNE_vs_UMAP_GlobalStructure
  Here we address the global structure preservation by tSNE and UMAP
  ☆47Updated 5 years ago
• lawrennd / old_talks
  Talks from Neil Lawrence
  ☆54Updated 2 years ago
• kasparmartens / NeuralDecomposition
  PyTorch implementation of the paper "Neural Decomposition: Functional ANOVA with Variational Autoencoders"
  ☆25Updated 5 years ago
• kasparmartens / BasisVAE
  PyTorch implementation of BasisVAE: Translation-invariant feature-level clustering with Variational Autoencoders
  ☆42Updated 5 years ago