Fast computation of diffusion maps and geometric harmonics in Python. Moved to https://git.sr.ht/~jmbr/diffusion-maps
☆43Jul 27, 2021Updated 4 years ago
Alternatives and similar repositories for diffusion-maps
Users that are interested in diffusion-maps are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Library for diffusion maps☆50Dec 22, 2021Updated 4 years ago
- Repository containing the code for Implicit Manifold Gaussian Process.☆16Aug 8, 2024Updated last year
- Winter is coming...☆14Jan 23, 2019Updated 7 years ago
- C++ implementation of the Diffusion Map, with Python bindings☆10Aug 22, 2017Updated 8 years ago
- Bipartite Configuration Model for Python☆16Dec 10, 2020Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- C++ Accelerated Python Diffusion Maps Library☆24Aug 28, 2018Updated 7 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- Diffusion map based embedding and alignment☆69Mar 2, 2022Updated 4 years ago
- Comparison of principal components analysis with diffusion maps on toy data sets and a molecular simulation trajectory☆17Feb 1, 2017Updated 9 years ago
- A library implementing the kernels for and experiments using extrinsic gauge equivariant vector field Gaussian Processes☆26Oct 28, 2021Updated 4 years ago
- This repository contains the code for the paper "Geometry-aware Bayesian Optimization in Roboticsusing Riemannian Matérn Kernels" (CoRL'2…☆26Aug 3, 2023Updated 2 years ago
- Supplementary code for the NeurIPS 2020 paper "Matern Gaussian processes on Riemannian manifolds".☆31Feb 3, 2025Updated last year
- Automated cell filtering for single-cell RNA sequencing data☆26Nov 14, 2023Updated 2 years ago
- Dynamic Histogram Analysis To Determine Free Energies and Rates from Biased Simulations☆22Mar 13, 2018Updated 8 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Entropy from PDB conformational ensembles☆13Mar 28, 2024Updated 2 years ago
- The EpiDiverse Bisulfite SNP-Calling and Methylation Clustering Pipeline, implemented with Nextflow☆12Jul 23, 2022Updated 3 years ago
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆74Jun 12, 2023Updated 3 years ago
- A package for protein conformational ensemble analyses based on a differential geometry representation of protein backbones.☆11Apr 26, 2026Updated 2 months ago
- A Julia implementation of sparse Gaussian processes via path-wise doubly stochastic variational inference.☆33Aug 27, 2020Updated 5 years ago
- ☆17May 22, 2023Updated 3 years ago
- A Shotgun Metagenome Annotation Pipeline☆24Mar 24, 2017Updated 9 years ago
- molecular plots in Jupyter, powererd by Blender Geometry Nodes☆60Mar 27, 2024Updated 2 years ago
- ☆12Oct 7, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A python module to plot secondary structure schemes☆26Mar 18, 2026Updated 3 months ago
- GraphLand: Evaluating Graph Machine Learning Models on Diverse Industrial Data☆36Apr 8, 2026Updated 2 months ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 5 years ago
- Deep Origin CLI and Python client☆14Updated this week
- CosolvKit is a versatile tool for cosolvent MD preparation and analysis☆33Jun 9, 2026Updated 3 weeks ago
- Generate amazing umap network graphs☆11Mar 16, 2021Updated 5 years ago
- ☆12Jul 26, 2016Updated 9 years ago
- Pras Server is a library to repair PDB or mmCIF structures, add missing heavy atoms and hydrogen atoms and assign secondary structure by …☆28May 4, 2026Updated last month
- AllenDigger, a tool for spatial expression data visualization, spatial heterogeneity delineation and single cell registration based on Al…☆14Apr 2, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A software research tool for the analysis of structural communication in protein ensembles☆14Mar 24, 2022Updated 4 years ago
- A simple implementation of replica exchange MD simulations for OpenMM.☆26Jul 19, 2021Updated 4 years ago
- A simple implementation of UMAP, TSNE and GDR across frameworks and libraries☆13Dec 10, 2024Updated last year
- pyABC: distributed, likelihood-free inference☆13Jan 26, 2018Updated 8 years ago
- Nested lists published on GitHub.☆13Sep 7, 2022Updated 3 years ago
- repo for OBF community newsletter updates☆19Nov 18, 2025Updated 7 months ago
- Code and results for Machine Learning Models to Accelerate the Design of Polymeric Long-Acting Injectables☆16Sep 29, 2022Updated 3 years ago