I2C9W / fromtexttotables

Related projects ⓘ

Alternatives and complementary repositories for fromtexttotables

• MadhumitaSushil / OncLLMExtraction
  Expert-Curated Oncology Reports to Advance Language Model Inference
  ☆25Updated 7 months ago
• Dyke-F / RAG_Medical_Guidelines
  Vector Guideline Comparison for Medical Oncology
  ☆27Updated 5 months ago
• CogStack / Foresight
  Deep Generative Modelling of Patient Timelines using Electronic Health Records
  ☆50Updated 10 months ago
• CogStack / MedCATtutorials
  General tutorials for the setup and use of MedCAT.
  ☆32Updated last month
• Dana-Farber-AIOS / GPT4DFCI
  A private and secure generative AI tool, based on GPT-4 and deployed for non-clinical use at Dana-Farber Cancer Institute
  ☆57Updated 2 weeks ago
• drivendataorg / snomed-ct-entity-linking
  Winners of the SNOMED CT Entity Linking Challenge
  ☆25Updated 7 months ago
• ncbi / AIONER
  AIONER
  ☆44Updated 3 months ago
• DATEXIS / UMLSParser
  Python module to parse UMLS source files
  ☆19Updated last year
• uf-hobi-informatics-lab / GatorTron
  all scripts used in gatortron project
  ☆111Updated last year
• AIM-Harvard / ChatGPT_NCCN
  Code base, outputs, scoring guidelines and annotations for ChatGPT NCCN evaluation | Paper: https://jamanetwork.com/journals/jamaoncology…
  ☆17Updated last year
• StanfordMIMI / clin-summ
  Clinical text summarization by adapting large language models
  ☆120Updated 3 months ago
• hiesingerlab / almanac-retrieval
  Almanac: Retrieval-Augmented Language Models for Clinical Medicine
  ☆28Updated 8 months ago
• BIDS-Xu-Lab / Me-LLaMA
  A novel medical large language model family with 13/70B parameters, which have SOTA performances on various medical tasks
  ☆119Updated 4 months ago
• metapub / metapub
  Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.
  ☆95Updated 3 months ago
• MASILab / pyPheWAS
  MASI Lab Implementation of PheWAS in Python
  ☆27Updated last week
• tatonetti-lab / tcga-path-reports
  TCGA Pathology Reports in Machine Readable Text
  ☆33Updated 5 months ago
• manuel-munoz-aguirre / PyHIST
  A pipeline to segment tissue from the background in histological images
  ☆66Updated last year
• cumc-dbmi / cehrbert
  CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks
  ☆31Updated last week
• DataX-JieHao / Cox-PASNet
  Pathway-based sparse deep neural network for survival analysis
  ☆36Updated last year
• paulhager / MIMIC-Clinical-Decision-Making-Dataset
  Code repository to create the MIMIC-CDM Dataset.
  ☆19Updated last week
• hirsch-lab / roc-utils
  Python package to compute and visualize a ROC analysis
  ☆28Updated 3 years ago
• AIM-Harvard / SDoH
  Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…
  ☆40Updated 10 months ago
• jayetri / DrugEHRQA-A-Question-Answering-Dataset-on-Structured-and-Unstructured-Electronic-Health-Records
  ☆9Updated 2 years ago
• AI-in-Health / DrugGPT
  ☆5Updated 2 months ago
• BrunakSanderLabs / CancerRiskNet
  ☆54Updated 6 months ago
• nyukat / pathology_extraction
  Improving Information Extraction from Pathology Reports using Named Entity Recognition
  ☆12Updated last year
• BiomedicalMachineLearning / HEMnet
  A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues
  ☆29Updated last year
• fedshyvana / pathology_mllm_training
  ☆75Updated 6 months ago
• owkin / HE2RNA_code
  Train a model to predict gene expression from histology slides.
  ☆93Updated 2 years ago
• ncbi-nlp / TrialGPT
  Code and data for TrialGPT.
  ☆45Updated 3 months ago