Alternatives and similar repositories for fromtexttotables

Users that are interested in fromtexttotables are comparing it to the libraries listed below

• MASILab / pyPheWAS
  MASI Lab Implementation of PheWAS in Python
  ☆28Updated 11 months ago
• Dyke-F / RAG_Medical_Guidelines
  Vector Guideline Comparison for Medical Oncology
  ☆37Updated last year
• MadhumitaSushil / OncLLMExtraction
  Expert-Curated Oncology Reports to Advance Language Model Inference
  ☆29Updated last year
• CogStack / Foresight
  Deep Generative Modelling of Patient Timelines using Electronic Health Records
  ☆64Updated 4 months ago
• CogStack / MedCATtutorials
  General tutorials for the setup and use of MedCAT.
  ☆40Updated 5 months ago
• Dana-Farber-AIOS / GPT4DFCI
  A private and secure generative AI tool, based on GPT and o models, deployed for non-clinical use at Dana-Farber Cancer Institute
  ☆63Updated 9 months ago
• RuishanLiu / TrialPathfinder
  ☆65Updated 3 years ago
• BrunakSanderLabs / CancerRiskNet
  ☆69Updated last year
• AIM-Harvard / SDoH
  Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…
  ☆48Updated last year
• mims-harvard / ClinVec
  ClinVec: Unified Embeddings of Clinical Codes Enable Knowledge-Grounded AI in Medicine
  ☆71Updated 2 months ago
• AIM-Harvard / ChatGPT_NCCN
  Code base, outputs, scoring guidelines and annotations for ChatGPT NCCN evaluation | Paper: https://jamanetwork.com/journals/jamaoncology…
  ☆18Updated 2 years ago
• nyuolab / NYUTron
  public code repository for paper "Health system scale language models are general purpose clinical prediction engines"
  ☆118Updated 2 years ago
• BIDS-Xu-Lab / Me-LLaMA
  A novel medical large language model family with 13/70B parameters, which have SOTA performances on various medical tasks
  ☆162Updated 9 months ago
• hiesingerlab / almanac-retrieval
  Almanac: Retrieval-Augmented Language Models for Clinical Medicine
  ☆36Updated last year
• ncbi-nlp / TrialGPT
  Code and data for TrialGPT.
  ☆130Updated 9 months ago
• theislab / ehrapy
  Electronic Health Record Analysis with Python.
  ☆309Updated last week
• HPIMS / phe2vec
  Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records
  ☆24Updated 4 years ago
• uf-hobi-informatics-lab / GatorTron
  all scripts used in gatortron project
  ☆124Updated last year
• StanfordMIMI / clin-summ
  Clinical text summarization by adapting large language models
  ☆149Updated last year
• iv-lop / clear
  ☆14Updated last year
• broadinstitute / ml4h
  ☆149Updated this week
• metapub / metapub
  Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.
  ☆132Updated 2 months ago
• KatherLab / LLMAnonymizer-Publication
  Anonymize Medical Documents using LLMs
  ☆52Updated last year
• spiros / tofu
  Tofu is a Python tool for generating synthetic UK Biobank data.
  ☆64Updated 2 years ago
• tatonetti-lab / tnm-stage-classifier
  Extract TNM cancer staging from pathology notes.
  ☆11Updated last year
• drivendataorg / snomed-ct-entity-linking
  Winners of the SNOMED CT Entity Linking Challenge
  ☆42Updated last year
• jkefeli / tcga-path-reports
  TCGA Pathology Reports in Machine Readable Text
  ☆11Updated last year
• huangzhii / SALMON
  SALMON: Survival Analysis Learning with Multi-Omics Neural Networks
  ☆67Updated last year
• DataX-JieHao / Cox-PASNet
  Pathway-based sparse deep neural network for survival analysis
  ☆39Updated 2 years ago
• Aitslab / EasyNER
  a customzable pipeline for information extraction
  ☆18Updated 5 months ago