LeoBman / HSDNLinks
Maps symptom and disease terms to MeSH IDs
☆19Updated 10 years ago
Alternatives and similar repositories for HSDN
Users that are interested in HSDN are comparing it to the libraries listed below
Sorting:
- Analysis of the human symptoms–disease network☆21Updated 8 years ago
- Code for paper "A deep learning framework for drug repurposing via emulating clinical trials on real world patient data" (Accepted to Nat…☆96Updated 3 years ago
- Learning from Discharge Summaries to extract mentioned diagnoses using Hierarchical Attention Model☆34Updated 7 years ago
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 4 years ago
- Predicting adverse drug reactions from a knowledge graph☆27Updated 4 years ago
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆31Updated 2 years ago
- Python module to parse UMLS source files☆19Updated 2 years ago
- Source code for Medical Concept Embedding with Time-Aware Embedding☆22Updated 5 years ago
- Processing SIDER 4.1: the side effect resource☆23Updated 9 years ago
- PIC (Pediatric Intensive Care) database☆43Updated 2 years ago
- MIMIC preprocessing for the ICML paper "Dynamic Measurement Scheduling for Event Forecasting Using Deep RL"☆19Updated 6 years ago
- K-RET: Knowledgeable Biomedical Relation Extraction System☆10Updated 3 months ago
- Implementation of Deep Patient Representation of Clinical Notes at Intensive Care Unit for Multi-Task Prediction☆32Updated 5 years ago
- Corresponding code for experiments described in "Predicting Clinical Outcomes Across Changing Electronic Health Records." Presented at KD…☆11Updated 7 years ago
- PyPI Package: An easy-to-use medication/drug code mapping tool☆19Updated last year
- Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J☆16Updated 11 months ago
- Retrieve and process PubTator annotations☆44Updated last year
- ☆40Updated 3 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- SmuDGE: Semantic Disease Gene Embeddings☆12Updated 6 years ago
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆43Updated last year
- Data structures and code to read/write BioC XML and Json.☆32Updated last year
- Drug repurposing for COVID-19 using literature-based discovery☆28Updated 2 years ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 4 years ago
- Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)☆16Updated 3 years ago
- User-friendly extensions to the Disease Ontology☆20Updated 8 years ago
- A Standard Database for Drug Repositioning☆19Updated 7 years ago
- Turning Ontologies Plus Annotation Properties into Vectors☆35Updated 4 years ago
- Method for drug repurposing from knowledge graphs and literature☆34Updated 4 years ago
- Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆41Updated last month