LeoBman / HSDN
Maps symptom and disease terms to MeSH IDs
☆18Updated 9 years ago
Related projects: ⓘ
- Analysis of the human symptoms–disease network☆19Updated 7 years ago
- Implementation of Deep Patient Representation of Clinical Notes at Intensive Care Unit for Multi-Task Prediction☆31Updated 5 years ago
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆25Updated last year
- Learning from Discharge Summaries to extract mentioned diagnoses using Hierarchical Attention Model☆34Updated 6 years ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆33Updated 5 months ago
- migrates from swat-4-med-safety/SW-DDI-catalog/drug-drug-interactions☆35Updated 6 years ago
- ☆51Updated 4 years ago
- Processing SIDER 4.1: the side effect resource☆20Updated 8 years ago
- MIMIC preprocessing for the ICML paper "Dynamic Measurement Scheduling for Event Forecasting Using Deep RL"☆17Updated 5 years ago
- Method for drug repurposing from knowledge graphs and literature☆33Updated 4 years ago
- ☆32Updated 5 years ago
- SmuDGE: Semantic Disease Gene Embeddings☆12Updated 6 years ago
- An information extraction system for free-text eligibility criteria☆36Updated 5 years ago
- Code for paper "A deep learning framework for drug repurposing via emulating clinical trials on real world patient data" (Accepted to Nat…☆93Updated 2 years ago
- UMLS Graph database for semantic queries☆19Updated last year
- Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)☆15Updated 2 years ago
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 3 years ago
- Predicting adverse drug reactions from a knowledge graph☆27Updated 3 years ago
- a module to calculate the MeSH similarity☆22Updated 2 years ago
- Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J☆15Updated 2 months ago
- Retrieve and process PubTator annotations☆43Updated last year
- ☆38Updated 2 years ago
- Public release of the DeepPhe analytic software☆30Updated last year
- Cataloging pharmacotherapies in clinical trial from ClinicalTrials.gov☆25Updated 8 years ago
- ☆41Updated 4 years ago
- Data structures and code to read/write BioC XML and Json.☆29Updated last year
- Drug repurposing for COVID-19 using literature-based discovery☆27Updated 2 years ago
- ☆30Updated 7 years ago
- Python module to parse UMLS source files☆18Updated last year
- MedXN is a medication normalization system built upon Apache UIMA framework.☆22Updated 7 months ago