TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram averaging.
☆29Jun 29, 2025Updated last year
Alternatives and similar repositories for TomoBEAR
Users that are interested in TomoBEAR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Converts Dynamo tables to star files for coordinate import into RELION 4.0☆14Jul 25, 2023Updated 3 years ago
- Complementary tools for Relion tomo☆12Mar 9, 2024Updated 2 years ago
- ☆11Aug 21, 2026Updated 2 weeks ago
- Miscellaneous scripts for processing cryo-ET data☆23Jul 29, 2026Updated last month
- cryo-ET workflow☆11Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Self-supervised deep learning for denoising and missing wedge reconstruction of cryo-ET tomograms☆56Jul 29, 2025Updated last year
- STOPGAP is a MATLAB-based package for subtomogram averaging.☆40Jun 5, 2026Updated 2 months ago
- Contextual Analysis Tools for cryoET and subtomogram averaging☆42Updated this week
- a bidirectional interface between Dynamo and the Warp-RELION-M pipeline☆21Jul 28, 2023Updated 3 years ago
- Scripts to make cryo-electron tomography a bit easier☆15Aug 7, 2026Updated 3 weeks ago
- Neural networks to analyze structural heterogeneity in cryo-electron sub-tomograms☆33Jul 13, 2026Updated last month
- cryo-ET particle picking by representation and metric learning☆47Nov 24, 2025Updated 9 months ago
- SerialEM mdoc files as pandas dataframes☆14Feb 4, 2026Updated 6 months ago
- Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.☆30Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A somewhat cleaned-up version of the TOM toolbox for electron tomography☆16Nov 26, 2016Updated 9 years ago
- Rapidly simulate realistic cryo-EM particles☆19May 18, 2023Updated 3 years ago
- ☆57Aug 19, 2024Updated 2 years ago
- ☆11Mar 23, 2023Updated 3 years ago
- ☆28Aug 19, 2026Updated 2 weeks ago
- Very simple script for EPU users which adds beam tilt classes to the star file☆11Nov 3, 2023Updated 2 years ago
- ☆83Aug 19, 2026Updated 2 weeks ago
- Tool for reconstruction and analysis of continuous heterogeneity of a cryo-EM dataset☆34Sep 18, 2025Updated 11 months ago
- automated on-the-fly tilt-series alignment☆11Jul 6, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Self-supervised deep learning framework for CryoET analysis☆20Apr 11, 2026Updated 4 months ago
- ☆23Nov 15, 2025Updated 9 months ago
- A CTF Simulation Web App☆13May 11, 2026Updated 3 months ago
- simplify the handling of large sets of Euler angles in Python☆33Feb 1, 2022Updated 4 years ago
- ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.☆47Jun 16, 2026Updated 2 months ago
- cryo-EM tomogram simulator☆34Aug 21, 2026Updated last week
- Cellular content mining and particle localization☆10Sep 21, 2025Updated 11 months ago
- PyTom software for cryo-tomogram processing☆46Jan 5, 2026Updated 7 months ago
- Anisotropic correction of beam induced sample motion for cryo-electron microscopy and tomography☆62Oct 3, 2025Updated 11 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- IMOD model files as pandas dataframes in Python☆13Jun 26, 2025Updated last year
- ☆19Jan 23, 2026Updated 7 months ago
- Scripts and Tools for Electron Microscopy Image Analysis.☆12Jul 27, 2026Updated last month
- A Modular Platform for Streamlining Automated Cryo-FIB Workflows☆26Mar 5, 2025Updated last year
- Segment Organelles from Electron Microscopy Datasets with Segment-Anything 2☆19Jun 23, 2026Updated 2 months ago
- a tool for using surfaces to explore volumetric data in napari☆22Jun 13, 2026Updated 2 months ago
- ☆18Updated this week