STOPGAP is a MATLAB-based package for subtomogram averaging.
☆38Aug 6, 2025Updated 7 months ago
Alternatives and similar repositories for STOPGAP
Users that are interested in STOPGAP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A set of MATLAB wrapper scripts to help with pre-processing of tomography data.☆20Jan 23, 2026Updated 2 months ago
- 3D-CTF correction for cryo-electron tomography☆28Nov 8, 2018Updated 7 years ago
- ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.☆43Mar 11, 2025Updated last year
- cryo-EM tomogram simulator☆30Updated this week
- structural heterogeneity analysis for cryo-ET subtomogram☆10Updated this week
- Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.☆30Dec 1, 2025Updated 3 months ago
- a tool for using surfaces to explore volumetric data in napari☆19Feb 25, 2026Updated last month
- TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram…☆29Jun 29, 2025Updated 8 months ago
- A somewhat cleaned-up version of the TOM toolbox for electron tomography☆16Nov 26, 2016Updated 9 years ago
- Singularity image for cryo-CARE☆37Jan 7, 2022Updated 4 years ago
- Cryo-EM/ET image analysis☆12Sep 19, 2025Updated 6 months ago
- Self-supervised deep learning framework for CryoET analysis☆20Feb 18, 2026Updated last month
- ☆19Jan 23, 2026Updated 2 months ago
- Self-supervised learning for isotropic cryoET reconstruction☆90Dec 29, 2024Updated last year
- GPU-accelerated template matching for cryo-ET☆56Mar 6, 2026Updated 2 weeks ago
- a bidirectional interface between Dynamo and the Warp-RELION-M pipeline☆19Jul 28, 2023Updated 2 years ago
- Miscellaneous scripts for processing cryo-ET data☆22Feb 25, 2025Updated last year
- ☆16Feb 4, 2017Updated 9 years ago
- Converts Dynamo tables to star files for coordinate import into RELION 4.0☆13Jul 25, 2023Updated 2 years ago
- ☆24Feb 26, 2026Updated 3 weeks ago
- Python scripts to manipulate Relion tomo STAR files and much more...☆14Sep 12, 2025Updated 6 months ago
- Jupyter-based tool for membrane segmentation manipulation☆10Jul 9, 2025Updated 8 months ago
- A collaborative knowledge sharing platform for the cryo-ET community☆20Aug 7, 2024Updated last year
- membrane segmentation in 3D for cryo-ET☆88Feb 27, 2026Updated 3 weeks ago
- Contextual Analysis Tools for cryoET and subtomogram averaging☆34Feb 10, 2026Updated last month
- Complementary tools for Relion tomo☆12Mar 9, 2024Updated 2 years ago
- IMOD model files as pandas dataframes in Python☆12Jun 26, 2025Updated 8 months ago
- GPU accelerated software package for CTF estimation of cryoEM micrographs and cryoET tilt series☆25Mar 5, 2026Updated 2 weeks ago
- Generates synthetic datasets for Cryo-Electron Tomography☆34Feb 27, 2026Updated 3 weeks ago
- PyTom software for cryo-tomogram processing☆45Jan 5, 2026Updated 2 months ago
- Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (co…☆41Jan 30, 2024Updated 2 years ago
- ☆10Feb 19, 2026Updated last month
- Self-supervised deep learning for denoising and missing wedge reconstruction of cryo-ET tomograms☆49Jul 29, 2025Updated 7 months ago
- Scripts and Tools for Electron Microscopy Image Analysis.☆11Nov 25, 2025Updated 4 months ago
- ☆11Mar 23, 2023Updated 3 years ago
- A CLI tool to segment the lamella slab in cryo-ET volumes☆13Oct 21, 2024Updated last year
- Manipulate and mine Relion .star files☆19Nov 25, 2024Updated last year
- ☆66Feb 8, 2026Updated last month
- ☆54Aug 19, 2024Updated last year