Small Animal Magnetic Resonance Imaging via Python.
☆44Mar 4, 2024Updated 2 years ago
Alternatives and similar repositories for SAMRI
Users that are interested in SAMRI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Generate a package-manager-friendly mouse brain atlases collection.☆22Aug 4, 2023Updated 2 years ago
- Gentoo System and Image Builder☆11May 10, 2023Updated 2 years ago
- Medical image format converter: from raw Bruker ParaVision to nifti.☆31Dec 31, 2023Updated 2 years ago
- atlasBREX: Automated averaged template-derived brain extraction in animal MRI☆17Jan 15, 2024Updated 2 years ago
- Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain☆36Updated this week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Scripts to preprocess mouse MRI/fMRI/dMRI☆12May 22, 2024Updated last year
- Bruker ParaVision to NIfTI conversion☆14May 11, 2020Updated 5 years ago
- A modular toolkit for Bruker MRI raw-data handling.☆56Feb 3, 2026Updated 2 months ago
- A generally applicable whole-brain preprocessing toolbox for mice and rats☆14Jul 11, 2024Updated last year
- Tools for MRI mouse brain morphometry☆32Jan 16, 2017Updated 9 years ago
- Convert Pulseq files to Bruker sequences☆10Dec 12, 2018Updated 7 years ago
- A twolevel deformation based morphometry pipeline using ants☆13May 16, 2025Updated 11 months ago
- fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/☆56Apr 16, 2026Updated 2 weeks ago
- Lab Book Database Framework with Input, Output, and Reporting Functions☆14Jul 18, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A Python package providing I/O interface for Bruker data sets☆30Apr 17, 2026Updated 2 weeks ago
- Discussions and suggestions of backwards incompatible changes to BIDS☆12Apr 27, 2024Updated 2 years ago
- Command-line utility for iteratively developing pipelines, deploying them at scale, and sharing data and derivatives☆10Jun 15, 2020Updated 5 years ago
- fMRIPrep for Rodents☆13Feb 17, 2026Updated 2 months ago
- A Rat fMRI multi-center study☆33Aug 12, 2022Updated 3 years ago
- A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support☆36Apr 16, 2026Updated 2 weeks ago
- Multi Atlas Segmentation and Morphometric analysis toolkit (MASMAT) for mouse brain MRI☆40Nov 28, 2025Updated 5 months ago
- Python ESPIRiT implementation☆11Feb 24, 2017Updated 9 years ago
- GPU accelerated non-Cartesian magnetic resonance imaging reconstruction toolkit☆14Mar 19, 2020Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- MP2RAGE Scripts - T1 map correction & Background noise removal☆74Feb 13, 2026Updated 2 months ago
- U-Net based automatic Rat brain-mask Segmentation tool, developed by Hsu☆18Nov 15, 2021Updated 4 years ago
- A python package for the automatic conversion of EEG datasets to the BIDS standard, with a focus on making the most out of metadata.☆13Feb 26, 2026Updated 2 months ago
- This does everything that I need. Layering, smoothing-within layers, layer-connectivity, RF-coil,combination, 2D-dridding of layers and c…☆23Jan 16, 2026Updated 3 months ago
- Toolbox for structural and functional brain connectivity reconstruction.☆19Oct 21, 2024Updated last year
- Tools for spatial and temporal autocorrelation☆27Apr 24, 2023Updated 3 years ago
- The NIfTI-MRS data standard: specification, code, and example data.☆18Apr 9, 2026Updated 3 weeks ago
- This repository contains the core functions from neuropower in a python package.☆14Apr 1, 2025Updated last year
- PysynthMRI is a python open-source tool which provides a user-friendly interface to synthesize contrast weighted images.☆25Nov 10, 2025Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆34Mar 5, 2026Updated last month
- Slice Display is a MATLAB toolbox for visualizing fMRI data. It can make dual-coded images (simultaneous display of contrast estimate and…☆13Dec 19, 2023Updated 2 years ago
- BIDS App containing an instance of the SPM software.☆15Mar 17, 2026Updated last month
- Magnetic resonance imaging and tractography with R☆30Updated this week
- Multi-Template Mouse Brain MRI Atlas (MBMA): both in-vivo and ex-vivo☆27Jan 20, 2024Updated 2 years ago
- MOVED TO https://github.com/nipreps/dmriprep☆17Dec 26, 2022Updated 3 years ago
- MATLAB Toolbox for Power Magnetics: Model and Optimization☆25Jun 20, 2025Updated 10 months ago