Small Animal Magnetic Resonance Imaging via Python.
☆44Mar 4, 2024Updated 2 years ago
Alternatives and similar repositories for SAMRI
Users that are interested in SAMRI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Generate a package-manager-friendly mouse brain atlases collection.☆22Aug 4, 2023Updated 2 years ago
- Gentoo System and Image Builder☆11May 10, 2023Updated 3 years ago
- Medical image format converter: from raw Bruker ParaVision to nifti.☆32Dec 31, 2023Updated 2 years ago
- atlasBREX: Automated averaged template-derived brain extraction in animal MRI☆18Jan 15, 2024Updated 2 years ago
- small mammals brain MRI☆15Oct 13, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain☆36Jun 22, 2026Updated last week
- Scripts to preprocess mouse MRI/fMRI/dMRI☆12May 22, 2024Updated 2 years ago
- Bruker ParaVision to NIfTI conversion☆14May 11, 2020Updated 6 years ago
- A modular toolkit for Bruker MRI raw-data handling.☆56Feb 3, 2026Updated 4 months ago
- A generally applicable whole-brain preprocessing toolbox for mice and rats☆14Jul 11, 2024Updated last year
- Tools for MRI mouse brain morphometry☆32Jan 16, 2017Updated 9 years ago
- Convert Pulseq files to Bruker sequences☆10Dec 12, 2018Updated 7 years ago
- fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/☆61May 25, 2026Updated last month
- Lab Book Database Framework with Input, Output, and Reporting Functions☆14Jul 18, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Python package providing I/O interface for Bruker data sets☆33Apr 17, 2026Updated 2 months ago
- Discussions and suggestions of backwards incompatible changes to BIDS☆12Apr 27, 2024Updated 2 years ago
- Command-line utility for iteratively developing pipelines, deploying them at scale, and sharing data and derivatives☆10Jun 15, 2020Updated 6 years ago
- fMRIPrep for Rodents☆13Feb 17, 2026Updated 4 months ago
- A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support☆39May 12, 2026Updated last month
- Multi Atlas Segmentation and Morphometric analysis toolkit (MASMAT) for mouse brain MRI☆40Nov 28, 2025Updated 7 months ago
- Python ESPIRiT implementation☆11Feb 24, 2017Updated 9 years ago
- GPU accelerated non-Cartesian magnetic resonance imaging reconstruction toolkit☆14Mar 19, 2020Updated 6 years ago
- MP2RAGE Scripts - T1 map correction & Background noise removal☆74Feb 13, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- U-Net based automatic Rat brain-mask Segmentation tool, developed by Hsu☆18Nov 15, 2021Updated 4 years ago
- A python package for the automatic conversion of EEG datasets to the BIDS standard, with a focus on making the most out of metadata.☆13May 12, 2026Updated last month
- Toolbox for structural and functional brain connectivity reconstruction.☆19Oct 21, 2024Updated last year
- The NIfTI-MRS data standard: specification, code, and example data.☆18Apr 9, 2026Updated 2 months ago
- Tools for spatial and temporal autocorrelation☆27Apr 24, 2023Updated 3 years ago
- This repository contains the core functions from neuropower in a python package.☆14Apr 1, 2025Updated last year
- PysynthMRI is a python open-source tool which provides a user-friendly interface to synthesize contrast weighted images.☆25Nov 10, 2025Updated 7 months ago
- ☆34Mar 5, 2026Updated 3 months ago
- Slice Display is a MATLAB toolbox for visualizing fMRI data. It can make dual-coded images (simultaneous display of contrast estimate and…☆13Dec 19, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- BIDS App containing an instance of the SPM software.☆15Mar 17, 2026Updated 3 months ago
- Magnetic resonance imaging and tractography with R☆30May 8, 2026Updated last month
- Multi-Template Mouse Brain MRI Atlas (MBMA): both in-vivo and ex-vivo☆28Jan 20, 2024Updated 2 years ago
- MOVED TO https://github.com/nipreps/dmriprep☆17Dec 26, 2022Updated 3 years ago
- resources related to papers☆14Mar 17, 2026Updated 3 months ago
- MATLAB Toolbox for Power Magnetics: Model and Optimization☆26Jun 20, 2025Updated last year
- 3D Image Viewer with ROI tools for Matlab ( NIFTI viewer, Manual segmentation )☆48May 7, 2026Updated last month