Small Animal Magnetic Resonance Imaging via Python.
☆44Mar 4, 2024Updated 2 years ago
Alternatives and similar repositories for SAMRI
Users that are interested in SAMRI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- small mammals brain MRI☆15Oct 13, 2023Updated 3 years ago
- Generate a package-manager-friendly mouse brain atlases collection.☆23Aug 4, 2023Updated 3 years ago
- atlasBREX: Automated averaged template-derived brain extraction in animal MRI☆19Jan 15, 2024Updated 2 years ago
- Gentoo System and Image Builder☆11May 10, 2023Updated 3 years ago
- Medical image format converter: from raw Bruker ParaVision to nifti.☆32Dec 31, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A modular toolkit for Bruker MRI raw-data handling.☆57Oct 21, 2026Updated last week
- Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain☆39Oct 9, 2026Updated 3 weeks ago
- Bruker ParaVision to NIfTI conversion☆14May 11, 2020Updated 6 years ago
- A generally applicable whole-brain preprocessing toolbox for mice and rats☆14Jul 11, 2024Updated 2 years ago
- A Rat fMRI multi-center study☆34Aug 12, 2022Updated 4 years ago
- Scripts to preprocess mouse MRI/fMRI/dMRI☆12May 22, 2024Updated 2 years ago
- A Python package providing I/O interface for Bruker data sets☆33Aug 24, 2026Updated 2 months ago
- Convert Pulseq files to Bruker sequences☆11Dec 12, 2018Updated 7 years ago
- fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/☆62Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆15Apr 30, 2026Updated 6 months ago
- Tools for MRI mouse brain morphometry☆32Jan 16, 2017Updated 9 years ago
- Multi Atlas Segmentation and Morphometric analysis toolkit (MASMAT) for mouse brain MRI☆42Nov 28, 2025Updated 11 months ago
- A twolevel deformation based morphometry pipeline using ants☆13May 16, 2025Updated last year
- Lab Book Database Framework with Input, Output, and Reporting Functions☆14Jul 18, 2022Updated 4 years ago
- Multi-task U-Net for the simultaneous segmentation and skull-stripping of mouse brain MRI☆23Aug 20, 2021Updated 5 years ago
- Command-line utility for iteratively developing pipelines, deploying them at scale, and sharing data and derivatives☆10Jun 15, 2020Updated 6 years ago
- A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support☆40Oct 22, 2026Updated last week
- Discussions and suggestions of backwards incompatible changes to BIDS☆12Aug 20, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A Rat fMRI standardized protocol☆15Jul 25, 2024Updated 2 years ago
- fMRIPrep for Rodents☆13Feb 17, 2026Updated 8 months ago
- Reproducible Self-Publishing - Demo Publications in the Most Common Formats☆14Nov 10, 2023Updated 2 years ago
- ☆34Oct 22, 2026Updated last week
- Patch based denoising method, targeting fMRI thermal noise removal.☆26Oct 16, 2026Updated 2 weeks ago
- A medical image converter☆32Jul 20, 2025Updated last year
- Python ESPIRiT implementation☆11Feb 24, 2017Updated 9 years ago
- An ansible playbook to deploy a complete standalone neuroimaging workstation☆31Jun 18, 2026Updated 4 months ago
- Matlab GUI for single R2*/T2* mapping with multi-echo GRE data☆14Oct 4, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- U-Net based automatic Rat brain-mask Segmentation tool, developed by Hsu☆18Nov 15, 2021Updated 4 years ago
- precon_all surface pipline☆35Aug 12, 2026Updated 2 months ago
- GPU accelerated non-Cartesian magnetic resonance imaging reconstruction toolkit☆14Mar 19, 2020Updated 6 years ago
- MP2RAGE Scripts - T1 map correction & Background noise removal☆74Feb 13, 2026Updated 8 months ago
- cross-species alignment (joint-embedding between human and macaque)☆32Dec 3, 2021Updated 4 years ago
- A python package for the automatic conversion of EEG datasets to the BIDS standard, with a focus on making the most out of metadata.☆13Oct 21, 2026Updated last week
- The NIfTI-MRS data standard: specification, code, and example data.☆18Apr 9, 2026Updated 6 months ago